PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400055800

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NAC

Protein Properties

Length: 271aa MW: 30263.6 Da PI: 9.5649

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400055800	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	106.5	3.2e-33	2	76	54	129
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +ekewyfF+ rdkky+tg r+nrat++gyWkatgkd+e+++ +++lvg+kktLvfykgrapkgekt+Wv+he+rle PGSC0003DMP400055800 2 GEKEWYFFCVRDKKYPTGLRTNRATAAGYWKATGKDREIYR-GKSLVGMKKTLVFYKGRAPKGEKTNWVIHEFRLE 76 579************************************.999**************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.644	1	100	IPR003441	NAC domain
SuperFamily	SSF101941	9.68E-38	2	100	IPR003441	NAC domain
Pfam	PF02365	1.2E-14	6	75	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MGEKEWYFFC VRDKKYPTGL RTNRATAAGY WKATGKDREI YRGKSLVGMK KTLVFYKGRA 60 PKGEKTNWVI HEFRLEGKLS LHNLPKTAKN EWVICRVFQK SSGGKKIHIS GLLKLNSNEN 120 EMGNSFQPPL TDSGTASKSS HVHCFSNFLT AQNNLFPLLS NPMDSFPTTS LVPNTFSCNQ 180 IAPFTTNNLG SFGVQDPSIL LRTSLDNYGL NFKKEDIFNV PQETGVISTD MNTDIPSIVS 240 NLEMKRRFLE DQVPSAGMVG LQGLDCLWSC *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-31	1	106	68	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-31	1	106	68	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-31	1	106	68	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-31	1	106	68	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-31	1	106	71	174	NAC domain-containing protein 19
3swm_B	1e-31	1	106	71	174	NAC domain-containing protein 19
3swm_C	1e-31	1	106	71	174	NAC domain-containing protein 19
3swm_D	1e-31	1	106	71	174	NAC domain-containing protein 19
3swp_A	1e-31	1	106	71	174	NAC domain-containing protein 19
3swp_B	1e-31	1	106	71	174	NAC domain-containing protein 19
3swp_C	1e-31	1	106	71	174	NAC domain-containing protein 19
3swp_D	1e-31	1	106	71	174	NAC domain-containing protein 19
4dul_A	1e-31	1	106	68	171	NAC domain-containing protein 19
4dul_B	1e-31	1	106	68	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400055800

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	0.0	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006354772.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	4e-84	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	M1D6G1	0.0	M1D6G1_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400083083	0.0	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	2e-86	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400055800

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]