PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400054811

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

HD-ZIP

Protein Properties

Length: 460aa MW: 51302.1 Da PI: 4.5987

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400054811	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	50.8	2.9e-16	53	107	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +k +++++q++eLe +F+kn+ p+++ r eLA+kl+++ +qV++WFqN+R++ k PGSC0003DMP400054811 53 KKPIRHNADQIQELELFFKKNSLPNKKVRLELATKLSMDINQVQNWFQNKRTQVK 107 55667899*******************************************9876 PP
2	START	72.2	1.4e-23	191	352	2	145
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 la +a++el+++ + ++p+Wv+s e +n +e+ + f+ + +++ea +asg v +++ lv++l+d++ +W e+++ PGSC0003DMP400054811 191 LAMDALNELFRLYENDKPLWVSSLdgggETLNIKEYARLFTLLIGtkpehFTTEATTASGTVADTSLALVNTLMDKR-EWVEMFPcivg 278 577899****************999988888888888865555888999**********************.******* PP EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE- CS START 78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRa 145 k+ t++vis+g g l l+++elq +s lv R++ f+ +++++ +g+w+ivdvSvd q+ +s+ R+ PGSC0003DMP400054811 279 KIYTTDVISTGiggnksGSLLLIKTELQIISDLVYvREVQFLHFCKKHAEGVWAIVDVSVDTIQEGD-DSGANRV 352 ***********************************************************999987.6776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-16	41	107	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.43E-16	43	107	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.629	49	109	IPR001356	Homeobox domain
SMART	SM00389	3.0E-13	51	113	IPR001356	Homeobox domain
CDD	cd00086	2.10E-14	52	107	No hit	No description
Pfam	PF00046	8.4E-14	53	107	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	84	107	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	18.992	181	339	IPR002913	START domain
SuperFamily	SSF55961	4.94E-12	185	358	No hit	No description
SMART	SM00234	0.0057	190	412	IPR002913	START domain
Pfam	PF01852	8.3E-18	192	351	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MEGHSDMNER KESLINVVIG GSGEEEIERS SIGDNITGGA SVDERGESSS KRKKPIRHNA 60 DQIQELELFF KKNSLPNKKV RLELATKLSM DINQVQNWFQ NKRTQVKLQL ELYENKTLKQ 120 ENDKLRIENI VMKEALKNSI RDNFKENIDE NQIKIEHDQL EDEVKWLTAQ AYKSSLFNKD 180 VVQDKMVLLN LAMDALNELF RLYENDKPLW VSSLDGGGET LNIKEYARLF TLLIGTKPEH 240 FTTEATTASG TVADTSLALV NTLMDKREWV EMFPCIVGKI YTTDVISTGI GGNKSGSLLL 300 IKTELQIISD LVYVREVQFL HFCKKHAEGV WAIVDVSVDT IQEGDDSGAN RVVLQDTCMD 360 ATGSLLVYAT IDSQEINTVM KGGDSSCVTL FSNGITIVLD CFQDFFTTNN YNVISGEMNN 420 GFGGGSLMTT NFQIVGNIFP ATTLSMELVK EANALTNNS*

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MEGHSDMNER KESLINVVIG GSGEEEIERS SIGDNITGGA SVDERGESSS KRKKPIRHNA  60
DQIQELELFF KKNSLPNKKV RLELATKLSM DINQVQNWFQ NKRTQVKLQL ELYENKTLKQ  120
ENDKLRIENI VMKEALKNSI RDNFKENIDE NQIKIEHDQL EDEVKWLTAQ AYKSSLFNKD  180
VVQDKMVLLN LAMDALNELF RLYENDKPLW VSSLDGGGET LNIKEYARLF TLLIGTKPEH  240
FTTEATTASG TVADTSLALV NTLMDKREWV EMFPCIVGKI YTTDVISTGI GGNKSGSLLL  300
IKTELQIISD LVYVREVQFL HFCKKHAEGV WAIVDVSVDT IQEGDDSGAN RVVLQDTCMD  360
ATGSLLVYAT IDSQEINTVM KGGDSSCVTL FSNGITIVLD CFQDFFTTNN YNVISGEMNN  420
GFGGGSLMTT NFQIVGNIFP ATTLSMELVK EANALTNNS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400054811

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015160166.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
TrEMBL	M1D427	0.0	M1D427_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400080861	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15813	4	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.2	5e-86	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400054811

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]