PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400054468
Common NameLOC102604503
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ZF-HD
Protein Properties Length: 288aa    MW: 31788.1 Da    PI: 7.2948
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400054468genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer109.81.4e-3449107259
           ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                           ++v YkeClkNhAaslGghavDGCgEfmps++++ +++ +lkCaACgCHRnFHRre+++
  PGSC0003DMP400054468  49 TAVIYKECLKNHAASLGGHAVDGCGEFMPSPESTpSDPISLKCAACGCHRNFHRREPSD 107
                           6799***************************9999********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.4E-2951105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-3051113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.82253104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.9E-3153104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.606.7E-30159228IPR009057Homeodomain-like
SuperFamilySSF466891.89E-19159227IPR009057Homeodomain-like
TIGRFAMsTIGR015651.2E-26166223IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MELTCSTNPT PTSTKTPDSE VDTPPLIKPL SFSNGNNHHN HHHELPPCTA VIYKECLKNH  60
AASLGGHAVD GCGEFMPSPE STPSDPISLK CAACGCHRNF HRREPSDDSS PPAHFIDFRH  120
HIFPQIKRFS PSPSPSLSLS PPPLPSLFQP QPVTPTGLKS ENPNGRKRFR TKFTAEQKEK  180
MHSFSEKLGW KLQKCDETAV DEFCNEIGVG KSVLRVWMHN NKNTIGKKDY QSSRDHSFEN  240
KNGFNINGTA SSNEEEDHHK SNNNDNSTTS NCELHLHIST NGSSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-231672241875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400054468
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1465060.0AC146506.1 Solanum demissum chromosome 5 clone PGEC989P08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366102.10.0PREDICTED: zinc-finger homeodomain protein 10-like
SwissprotQ9LXG04e-61ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLM1D3960.0M1D396_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000802880.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.14e-57zinc finger homeodomain 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]