PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400054267 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 599aa MW: 67215.9 Da PI: 4.4778 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.7 | 3.4e-51 | 32 | 158 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 ppGfrFhPtdeelv +yLk+k+ ++++ l ++i+e+d+yk+eP+dLp +k+k+++++w+fFs+rd+ky++g r+nra k+gyWkatgk PGSC0003DMP400054267 32 PPGFRFHPTDEELVLYYLKRKICRRRILL-DAIAETDVYKWEPEDLPdlSKLKTGDRQWFFFSPRDRKYPNGARSNRASKHGYWKATGK 119 9*************************999.99**************96559999*********************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d+ +++ ++++vg+kktLvfykgrap ge+tdWvmhey++ PGSC0003DMP400054267 120 DRIITC-NSRAVGVKKTLVFYKGRAPVGERTDWVMHEYTM 158 ******.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-59 | 25 | 181 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.714 | 31 | 181 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.0E-27 | 32 | 157 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 599 aa Download sequence Send to blast |
MKLLMDSSAP SSSSPCKEMK VSECFGENSV FPPGFRFHPT DEELVLYYLK RKICRRRILL 60 DAIAETDVYK WEPEDLPDLS KLKTGDRQWF FFSPRDRKYP NGARSNRASK HGYWKATGKD 120 RIITCNSRAV GVKKTLVFYK GRAPVGERTD WVMHEYTMDE EELKRCQNAQ DYYALYKVFK 180 KSGPGPKNGE QYGAPFREED WVDDECLNAK VSVQPEIPRH QESSAKNINV VPAPDDAIEE 240 LLKRPFTVDN NFALEQFVQE EDTESTLLNQ SSREVDLYNH CAVAGPSCQQ YDARASFDLT 300 ESGTSPLHLY EAPEVSSAPV NPVNPPYVVE EDFLEDFLEM DDLLVAEPNV QNFDHETPNG 360 QVFDKPAGNL ETLQFDDFDG LSEFDLYHDA PSRLDNVGTP TVGQIAEPYM NNFVNGITYP 420 DSTTYMSTFQ NDMMNNQQMC LNHENQINNQ FWMHDERFGS FNPIEEDQSV VDQASSGVVN 480 DNNMANYPMG ANQNLAKKDD GTQSWFSSNL WAFVDSIPTT PASAAESALV VNRAFERMSS 540 FSRMKLNVGN MNVAAGNTSA TSSSSGKAKY GLCCISLLGV LCAFLWVLIG TSAKIVGT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-48 | 31 | 158 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400054267 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF437523 | 0.0 | KF437523.1 Solanum tuberosum putative membrane bound NAC transcription factor 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015074110.1 | 0.0 | NAC domain-containing protein 17-like | ||||
TrEMBL | M1D2U0 | 0.0 | M1D2U0_SOLTU; Uncharacterized protein | ||||
STRING | Solyc04g072220.2.1 | 0.0 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G34190.1 | 5e-93 | NAC domain containing protein 17 |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400054267 |
Publications ? help Back to Top | |||
---|---|---|---|
|