PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400054265 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 902aa MW: 101750 Da PI: 4.5903 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.8 | 6.4e-51 | 32 | 158 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 ppGfrFhPtdeelv +yLk+k+ ++++ l ++i+e+d+yk+eP+dLp +k+k+++++w+fFs+rd+ky++g r+nra k+gyWkatgk PGSC0003DMP400054265 32 PPGFRFHPTDEELVLYYLKRKICRRRILL-DAIAETDVYKWEPEDLPdlSKLKTGDRQWFFFSPRDRKYPNGARSNRASKHGYWKATGK 119 9*************************999.99**************96559999*********************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d+ +++ ++++vg+kktLvfykgrap ge+tdWvmhey++ PGSC0003DMP400054265 120 DRIITC-NSRAVGVKKTLVFYKGRAPVGERTDWVMHEYTM 158 ******.999****************************87 PP | |||||||
2 | NAM | 100.6 | 2.1e-31 | 377 | 461 | 44 | 128 |
NAM 44 PwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 P+ + +k+k+++++w+fFs+rd+ky++g r+nra k+gyWkatgkd+ +++ ++++vg+kktLvfykgrap ge+tdWvmhey++ PGSC0003DMP400054265 377 PNLFYlSKLKTGDRQWFFFSPRDRKYPNGARSNRASKHGYWKATGKDRIITC-NSRAVGVKKTLVFYKGRAPVGERTDWVMHEYTM 461 433333488899****************************************.999****************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-59 | 25 | 181 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.714 | 31 | 181 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.5E-27 | 32 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.9 | 331 | 484 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.0E-15 | 377 | 460 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.83E-36 | 379 | 484 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 902 aa Download sequence Send to blast |
MKLLMDSSAP SSSSPCKEMK VSECFGENSV FPPGFRFHPT DEELVLYYLK RKICRRRILL 60 DAIAETDVYK WEPEDLPDLS KLKTGDRQWF FFSPRDRKYP NGARSNRASK HGYWKATGKD 120 RIITCNSRAV GVKKTLVFYK GRAPVGERTD WVMHEYTMDE EELKRCQNAQ DYYALYKVFK 180 KSGPGPKNGE QYGAPFREED WVDDECLNAK VSVQPEIPRH QESSAKNINV VPAPDDAIEE 240 LLKRPFTVDN NFALEQFVQE EDTESTLLNQ SSREVDLYNH CAVAGPSCQQ YDARASFDLT 300 ESGTSPLHLY EAPEVSSAPV NPVNPPYVVE EDFLEDFLEM DDLLVAIQDL ESVGAKWDSN 360 PQPQPSKVAL LPWHHKPNLF YLSKLKTGDR QWFFFSPRDR KYPNGARSNR ASKHGYWKAT 420 GKDRIITCNS RAVGVKKTLV FYKGRAPVGE RTDWVMHEYT MDEEELKRCQ NAQDYYALYK 480 VFKKSGPGPK NGEQYGAPFR EEDWVDDECL NAKVSVQPEI PRHQESSAKN INVVPAPDDA 540 IEELLKRPFT VDNNFALEQF VQEEDTESTL LNQSSREVDL YNHCAVAGPS CQQYDARASF 600 DLTESGTSPL HLYEAPEVSS APVNPVNPPY VVEEDFLEDF LEMDDLLVAE PNVQNFDHET 660 PNGQVFDKPA GNLETLQFDD FDGLSEFDLY HDAPSRLDNV GTPTVGQIAE PYMNNFVNGI 720 TYPDSTTYMS TFQNDMMNNQ QMCLNHENQI NNQFWMHDER FGSFNPIEED QSVVDQASSG 780 VVNDNNMANY PMGANQNLAK KDDGTQSWFS SNLWAFVDSI PTTPASAAES ALVVNRAFER 840 MSSFSRMKLN VGNMNVAAGN TSATSSSSGK AKYGLCCISL LGVLCAFLWV LIGTSAKIVG 900 T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-46 | 31 | 461 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400054265 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF437523 | 0.0 | KF437523.1 Solanum tuberosum putative membrane bound NAC transcription factor 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015169691.1 | 0.0 | PREDICTED: NAC domain-containing protein 17-like | ||||
Swissprot | Q9XIC5 | 1e-109 | NAC17_ARATH; NAC domain-containing protein 17 | ||||
TrEMBL | M1D2T8 | 0.0 | M1D2T8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400079995 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3212 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 7e-90 | NAC domain containing protein 17 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400054265 |