PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400054263 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 182aa MW: 21137.9 Da PI: 8.0281 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 73.5 | 5.1e-23 | 5 | 137 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk....kvkaeek..ewyfFskrdkkyatgkrknr.atksg 81 GfrF+Ptd e v +L + ++gk ++ + + ++vd y+ ePwd+ + +++ +++ ++ fF+++ kk++ ++r +r + ++g PGSC0003DMP400054263 5 EEGFRFSPTDAEAV-TFLLRFIAGKFMDDSGFiTTHVDTYSEqEPWDIYShgvpCCNDDNDctQYRFFITTLKKKS-ESRYSRnVGNKG 91 68************.89999*****9999888345668876449****7346663333222324456666666655.6677775888** PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wk++ k+k+v +k+g ++g kk++ + ++ k e +W+m+ey l PGSC0003DMP400054263 92 SWKQQDKSKPVRKKGGPVIGYKKSMCYK-NKGYKQEDGHWLMKEYDL 137 **************************97.66667789********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.06E-21 | 3 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 24.044 | 4 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-14 | 6 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MENLEEGFRF SPTDAEAVTF LLRFIAGKFM DDSGFITTHV DTYSEQEPWD IYSHGVPCCN 60 DDNDCTQYRF FITTLKKKSE SRYSRNVGNK GSWKQQDKSK PVRKKGGPVI GYKKSMCYKN 120 KGYKQEDGHW LMKEYDLSTY ILDKFDKDCR DIVLCAIKKR TRTKATMMLM NEECTNSEDQ 180 T* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400054263 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 1e-173 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015169693.1 | 1e-119 | PREDICTED: NAC domain-containing protein 78-like | ||||
TrEMBL | M1D2T6 | 1e-134 | M1D2T6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400079992 | 1e-135 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2219 | 12 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 9e-13 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400054263 |
Publications ? help Back to Top | |||
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