PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400053831 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 173aa MW: 19678.6 Da PI: 9.4846 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 178.6 | 3.6e-55 | 1 | 137 | 24 | 170 |
YABBY 24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprv 112 vsvP +sl+ +vtvrCGhCt+l svn+a a q ++++h + ++ + + e k++ + ++ ++++ s l + +++v + PGSC0003DMP400053831 1 VSVPCSSLLDIVTVRCGHCTNLWSVNMAAAFQSSSSQNH-HVQVPNYTAPEYKMDFGSSTKCNMNRMS---------LRTPITNNVHEE 79 8***************************99999999998.3333333333333333222222222222.........233333444444 PP YABBY 113 ppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl PGSC0003DMP400053831 80 RIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 137 4589****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.4E-58 | 1 | 137 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.84E-8 | 82 | 130 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.2E-4 | 85 | 131 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 173 aa Download sequence Send to blast |
VSVPCSSLLD IVTVRCGHCT NLWSVNMAAA FQSSSSQNHH VQVPNYTAPE YKMDFGSSTK 60 CNMNRMSLRT PITNNVHEER IVNRPPEKRQ RVPSAYNQFI KEEIQRIKAN NPDISHREAF 120 STAAKNWAHF PHIHFGLMLE SNNQAKLACG NVLITQIYIY LHLYKTLMVH KL* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400053831 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ667744 | 0.0 | KJ667744.1 Solanum sisymbriifolium YAB5 protein mRNA, complete cds. | |||
GenBank | KJ667745 | 0.0 | KJ667745.1 Solanum aethiopicum YAB5 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006358281.1 | 1e-110 | PREDICTED: axial regulator YABBY 5-like | ||||
Swissprot | Q8GW46 | 1e-72 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | M1D1R6 | 1e-127 | M1D1R6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400079392 | 1e-110 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G26580.2 | 8e-73 | YABBY family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400053831 |
Publications ? help Back to Top | |||
---|---|---|---|
|