PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400053719 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 152aa MW: 17715 Da PI: 6.2855 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.1 | 3.4e-19 | 54 | 106 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ +q+++Le+ Fe +++++ +++ ++A+++gL+ rq+ +WFqNrRa++k PGSC0003DMP400053719 54 KRRLRVDQVQALEKIFEVDNKLDPDRKVKIAQEIGLQPRQIAIWFQNRRARWK 106 4568889*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 124.5 | 4.9e-40 | 53 | 142 | 2 | 91 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 kkrrl +qv++LE+ Fe ++kL+p+rKv++a+e+glqprq+a+WFqnrRAR+ktkqlE+dy+ Lk++y+al+++ +++e+e+e L +e PGSC0003DMP400053719 53 KKRRLRVDQVQALEKIFEVDNKLDPDRKVKIAQEIGLQPRQIAIWFQNRRARWKTKQLERDYNILKSNYEALQHNYTKVEHEKEGLITE 141 9**********************************************************************************999876 PP HD-ZIP_I/II 91 l 91 + PGSC0003DMP400053719 142 V 142 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.58E-19 | 48 | 110 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.082 | 48 | 108 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-18 | 51 | 112 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.54E-16 | 53 | 109 | No hit | No description |
Pfam | PF00046 | 2.0E-16 | 54 | 106 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-20 | 60 | 107 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.9E-5 | 79 | 88 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 83 | 106 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.9E-5 | 88 | 104 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 7.3E-13 | 108 | 142 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MKRFSFSDSS GKLLYPTEEK NTENLGYSNE FQAMLDGLED EDGIEESGCG TGKKRRLRVD 60 QVQALEKIFE VDNKLDPDRK VKIAQEIGLQ PRQIAIWFQN RRARWKTKQL ERDYNILKSN 120 YEALQHNYTK VEHEKEGLIT EVIINLPHFL I* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 100 | 108 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400053719 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | Y17306 | 0.0 | Y17306.1 Lycopersicon esculentum mRNA for homeodomain protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015158857.1 | 1e-100 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like | ||||
Swissprot | Q940J1 | 1e-44 | ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16 | ||||
TrEMBL | M1D1G8 | 1e-108 | M1D1G8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400079230 | 1e-99 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22430.1 | 3e-43 | homeobox protein 6 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400053719 |
Publications ? help Back to Top | |||
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