PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400053718
Common NameLOC102587462
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 293aa    MW: 33602.1 Da    PI: 5.0241
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400053718genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-1854106456
                           -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           ++++  +q+++Le+ Fe +++++ +++ ++A+++gL+ rq+ +WFqNrRa++k
  PGSC0003DMP400053718  54 KRRLRVDQVQALEKIFEVDNKLDPDRKVKIAQEIGLQPRQIAIWFQNRRARWK 106
                           4567889*********************************************9 PP
2HD-ZIP_I/II122.91.5e-3953143292
           HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                           kkrrl  +qv++LE+ Fe ++kL+p+rKv++a+e+glqprq+a+WFqnrRAR+ktkqlE+dy+ Lk++y+al+++ +++e+e+e L +e
  PGSC0003DMP400053718  53 KKRRLRVDQVQALEKIFEVDNKLDPDRKVKIAQEIGLQPRQIAIWFQNRRARWKTKQLERDYNILKSNYEALQHNYTKVEHEKEGLITE 141
                           9*************************************************************************************999 PP

           HD-ZIP_I/II  91 lk 92 
                           lk
  PGSC0003DMP400053718 142 LK 143
                           87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.08248108IPR001356Homeobox domain
SuperFamilySSF466896.84E-1949110IPR009057Homeodomain-like
SMARTSM003891.4E-1851112IPR001356Homeobox domain
CDDcd000861.52E-1653109No hitNo description
PfamPF000466.7E-1654106IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-1960107IPR009057Homeodomain-like
PRINTSPR000315.2E-57988IPR000047Helix-turn-helix motif
PROSITE patternPS00027083106IPR017970Homeobox, conserved site
PRINTSPR000315.2E-588104IPR000047Helix-turn-helix motif
PfamPF021834.4E-15108149IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MKRFSFSDSS GKLLYPTEEK NTENLGYSNE FQAMLDGLED EDGIEESGCG TGKKRRLRVD  60
QVQALEKIFE VDNKLDPDRK VKIAQEIGLQ PRQIAIWFQN RRARWKTKQL ERDYNILKSN  120
YEALQHNYTK VEHEKEGLIT ELKGLKEKLG EETLLSPVFQ RPQEILNKLK NSSDFVDSKD  180
GSSDSDSSGV MNEENYNIST LKYQQLMPKV SSYNNALDHL SLSSSTYTQL MDPRASNSTS  240
SMRAFNNSNN QQQQQGVGRI EEQNGFTTED SCNIYSVDQA PNLYWYFSDH RN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100108RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400053718
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankY173060.0Y17306.1 Lycopersicon esculentum mRNA for homeodomain protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158857.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBLM1D1G70.0M1D1G7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000792300.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129391620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.11e-39homeobox protein 16
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]