PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400053209
Common NameLOC102594190
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 339aa    MW: 37972.6 Da    PI: 7.9223
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400053209genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.91.1e-15257282126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           +ktelC+ +++tG C+yGd+C+FaHg
  PGSC0003DMP400053209 257 FKTELCNKWQETGACPYGDNCQFAHG 282
                           79***********************8 PP
2zf-CCCH17.38.3e-06295320126
                           --S---SGGGGTS.--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaHg 26 
                           ykte Cr  +  G  C+yG rC+F H+
  PGSC0003DMP400053209 295 YKTEVCRMVLN-GdPCPYGHRCHFRHS 320
                           9******9999.55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.8E-20251289IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-11253288IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.69256284IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-9256283IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-13257282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-11290323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-8290325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.488294322IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-5294321IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MQREISTAGR GGAFSYDNGL PSPSVLSQPT AFDLTSLYSS MFFPPTGLLL DDSQPSTETT  60
VTPVLTPRFR QNHSSQLLID QHYQQDLMDR HNRVLSQLLE TEKKTLALRQ ENINLKMVNF  120
NLNNRLSLLL KASSDYGPSS GLGLDNGLRR MHVGVGHEEE TSSDEHSWED VVADRHLSPT  180
SVMDSGRADG VDRVLLPKSI SVRSNGYLKT NHAAGGSRPH IRTKSSSVNT AQRVYVKGGS  240
KKEEEPLELD VYNQGMFKTE LCNKWQETGA CPYGDNCQFA HGIEELRPVL RHPRYKTEVC  300
RMVLNGDPCP YGHRCHFRHS LTDQEKLMRS LNSKMRSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-22257320467Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400053209
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2123040.0AC212304.2 Solanum lycopersicum chromosome 05 clone C05HBa0309L13, complete sequence.
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344185.10.0PREDICTED: zinc finger CCCH domain-containing protein 15-like
SwissprotQ9C9F57e-67C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLM1D0A80.0M1D0A8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000785220.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91402228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.15e-64C3H family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]