PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400053170 | ||||||||
Common Name | LOC102585229 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB_related | ||||||||
Protein Properties | Length: 123aa MW: 14293.2 Da PI: 6.9319 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.7 | 4.8e-12 | 33 | 75 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++eEd+l+++ +++lG + W++Ia++++ + ++k++w+++l PGSC0003DMP400053170 33 FSKEEDDLIIRFHALLGDR-WSLIAERLP-EHSTIEVKNYWNSHL 75 89***************99.*********.9***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.35E-11 | 28 | 84 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-10 | 29 | 77 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 14.67 | 29 | 79 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.6E-11 | 33 | 75 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.03E-8 | 33 | 75 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.0E-16 | 33 | 76 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MSKSCYDPNK DKIQEAWSKD DSMANCCSKR IIFSKEEDDL IIRFHALLGD RWSLIAERLP 60 EHSTIEVKNY WNSHLKLKLT KMGIDPMNYR IQEYVHKKNL EFFSSRNKGF DVEISDAESS 120 SA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400053170 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 2e-32 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006344323.1 | 9e-87 | PREDICTED: myb-related protein Hv1-like isoform X1 | ||||
Swissprot | P20026 | 1e-19 | MYB1_HORVU; Myb-related protein Hv1 | ||||
TrEMBL | M1D069 | 2e-85 | M1D069_SOLTU; Uncharacterized protein | ||||
STRING | XP_009596675.1 | 2e-30 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71030.1 | 3e-23 | MYB-like 2 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400053170 |
Entrez Gene | 102585229 |
Publications ? help Back to Top | |||
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