PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400053056 | ||||||||
Common Name | LOC102586567 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 216aa MW: 24531.7 Da PI: 6.9176 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.2 | 6.9e-19 | 85 | 139 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Lee F++n++++ +++e LA++l+L+ rqV vWFqNrRa+ k PGSC0003DMP400053056 85 RKKLRLTKQQSFLLEESFRQNHTLNPKQKEALAMQLKLKARQVEVWFQNRRARSK 139 78889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 110.9 | 8.9e-36 | 85 | 173 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+k+q+ lLEesF+++++L+p++K++la +L+l++rqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL+keveeLr+ PGSC0003DMP400053056 85 RKKLRLTKQQSFLLEESFRQNHTLNPKQKEALAMQLKLKARQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLNEQNRRLKKEVEELRA 173 69*************************************************************************************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.92E-18 | 72 | 142 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.908 | 81 | 141 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-15 | 83 | 145 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.2E-16 | 85 | 139 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.73E-14 | 85 | 142 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-17 | 85 | 139 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 116 | 139 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 4.0E-20 | 141 | 184 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 6.5E-10 | 141 | 175 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MEIMPESSAC LELTMSIPGS SSNSSSFPSS GEGGGGRYNM MRDLELDINQ VPSSGNINDE 60 EISMEEEEEE SSNNNINDNI NGASRKKLRL TKQQSFLLEE SFRQNHTLNP KQKEALAMQL 120 KLKARQVEVW FQNRRARSKL KQTEMECEYL KRWFGSLNEQ NRRLKKEVEE LRAMKVGPPT 180 VLSPHSCHPL PASTLTMCPH CERVTKTNVR DESRI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 83 | 89 | SRKKLRL |
2 | 133 | 141 | RRARSKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400053056 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238741 | 1e-105 | AC238741.2 Solanum lycopersicum chromosome 05 clone C05HBa0078I05, complete sequence. | |||
GenBank | HG975444 | 1e-105 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. | |||
GenBank | HG975517 | 1e-105 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015162725.1 | 1e-158 | PREDICTED: homeobox-leucine zipper protein HOX3-like | ||||
Swissprot | Q0JKX1 | 4e-76 | HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q9XH38 | 4e-76 | HOX3_ORYSI; Homeobox-leucine zipper protein HOX3 | ||||
TrEMBL | M1CZW3 | 1e-157 | M1CZW3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400078329 | 1e-157 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 5e-60 | homeobox-leucine zipper protein 17 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400053056 |
Entrez Gene | 102586567 |
Publications ? help Back to Top | |||
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