PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400053001
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 222aa    MW: 23820.2 Da    PI: 9.2134
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400053001genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601231.6e-38401381100
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                           +CaaCk+lrr+Ca++C+++pyf   +p+kfa+vhk+FGasnv+kll   p  +r da++slvyeA++r+rdPvyG++g i++lqqq+++
  PGSC0003DMP400053001  40 PCAACKLLRRRCAEECPFSPYFSPLEPHKFAAVHKVFGASNVSKLLMV-PVGQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQIQN 127
                           7*******************************************9976.**************************************** PP

                DUF260  90 lkaelallkee 100
                           l++el+++++e
  PGSC0003DMP400053001 128 LQVELNTIRAE 138
                           ******99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.58339139IPR004883Lateral organ boundaries, LOB
PfamPF031959.9E-3940136IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGKKLKTEID ISQLHMQQQM GRRQVLGPVG GGTTLNNVTP CAACKLLRRR CAEECPFSPY  60
FSPLEPHKFA AVHKVFGASN VSKLLMVPVG QRADAANSLV YEANVRLRDP VYGCMGAIST  120
LQQQIQNLQV ELNTIRAEIL RYKYREAANS LIASISTSVA PELPQAPPTP PPPPPPPSMV  180
VVSSSSSSAS STSSNLYTPA SSSVANFSAI TNNNISYFDQ Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-42331464118LOB family transfactor Ramosa2.1
5ly0_B7e-42331464118LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00283DAPTransfer from AT2G30340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400053001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350875.21e-135PREDICTED: LOB domain-containing protein 13 isoform X1
SwissprotQ9AT619e-67LBD13_ARATH; LOB domain-containing protein 13
TrEMBLM1CZR71e-160M1CZR7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000782651e-134(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.14e-69LOB domain-containing protein 13
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Cho C,Jeon E,Pandey SK,Ha SH,Kim J
    LBD13 positively regulates lateral root formation in Arabidopsis.
    Planta, 2019. 249(4): p. 1251-1258
    [PMID:30627888]