PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400052842
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 669aa    MW: 73112.2 Da    PI: 6.3292
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400052842genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.42.9e-09257277526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           +C++f++ GtC++Gd+C +aHg
  PGSC0003DMP400052842 257 PCPDFRK-GTCQRGDSCEYAHG 277
                           8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.206.2E-1723158IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.24E-1524140IPR020683Ankyrin repeat-containing domain
PfamPF127961.4E-856128IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00586090IPR002110Ankyrin repeat
PROSITE profilePS5029715.11460138IPR020683Ankyrin repeat-containing domain
CDDcd002041.44E-1462157No hitNo description
PROSITE profilePS5008811.11495130IPR002110Ankyrin repeat
SMARTSM002480.007395127IPR002110Ankyrin repeat
SMARTSM003561.0E-5252278IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4257279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.173257279IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-6257277IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4285315IPR000571Zinc finger, CCCH-type
SMARTSM0035663287310IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.005287311IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MEAKIQKQKE LVPDFSLLLE LSASDDIRNF QKAVEEEGHD INEVGLWYAR RVGVKKMGYE  60
ERTPLMVAAT FGSKQVLNYM LEKGCVDVNQ ACGSDRATAL HCAISGGSAA LLEVVKLLLD  120
ASADVDLVDA NGKRAVDLIS GQSCCLNSRR KILEHLLGGC SSDEVIDQII SEQAEEQLLL  180
TPTVSKFGIE KKEYPVDPSL PDIKNGIYGT DDFRMYIFKV KPCSRAYSHD WTECPFVHPG  240
ENARRRDPSK YHYSCVPCPD FRKGTCQRGD SCEYAHGIFE CWLHPAQYRT RMCKDETNCN  300
RRVCFFAHKP EELRPLYPST GSAVLSPRSY SSGASSLDIT SITPLALGSP SVMIPPTSTP  360
PMSPSAGASS VGGSLWPCQS SPATPTLQLP ISRLKSAINA RDMEIGNGYL MQDQLMDELS  420
ALSLPSRWNS SSAKAAAFAA SSNDRNGEFS RHGGLNPSNL DDILANLDAK ILSQLQGLSL  480
DAVSPQLQSP KAMQMRQNMN QQHMTSYSSG QSSPSFRTSS SYGIDPSNAA ATAVLSSRAA  540
AFAKRSHSFI DRSGAGRLPN ASAVPSNLSG WGSPDGKLDW GIQKEELNKL RKSASFGLRS  600
SGSRFPTTSE ASVSDYSIEP DVSWVQSPDS RQLSMMEDQQ YRLNTSRGSE TMPTWVDQLY  660
MEQEQIVH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400052842
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350842.10.0PREDICTED: zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLM1CZB20.0M1CZB2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000780490.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-175C3H family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]