PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400052841 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C3H | ||||||||
Protein Properties | Length: 669aa MW: 73112.2 Da PI: 6.3292 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.4 | 2.9e-09 | 257 | 277 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ GtC++Gd+C +aHg PGSC0003DMP400052841 257 PCPDFRK-GTCQRGDSCEYAHG 277 8******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 6.2E-17 | 23 | 158 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.24E-15 | 24 | 140 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.4E-8 | 56 | 128 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0058 | 60 | 90 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 15.114 | 60 | 138 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.44E-14 | 62 | 157 | No hit | No description |
PROSITE profile | PS50088 | 11.114 | 95 | 130 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0073 | 95 | 127 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 1.0E-5 | 252 | 278 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 257 | 279 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.173 | 257 | 279 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-6 | 257 | 277 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-4 | 285 | 315 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 63 | 287 | 310 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.005 | 287 | 311 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 669 aa Download sequence Send to blast |
MEAKIQKQKE LVPDFSLLLE LSASDDIRNF QKAVEEEGHD INEVGLWYAR RVGVKKMGYE 60 ERTPLMVAAT FGSKQVLNYM LEKGCVDVNQ ACGSDRATAL HCAISGGSAA LLEVVKLLLD 120 ASADVDLVDA NGKRAVDLIS GQSCCLNSRR KILEHLLGGC SSDEVIDQII SEQAEEQLLL 180 TPTVSKFGIE KKEYPVDPSL PDIKNGIYGT DDFRMYIFKV KPCSRAYSHD WTECPFVHPG 240 ENARRRDPSK YHYSCVPCPD FRKGTCQRGD SCEYAHGIFE CWLHPAQYRT RMCKDETNCN 300 RRVCFFAHKP EELRPLYPST GSAVLSPRSY SSGASSLDIT SITPLALGSP SVMIPPTSTP 360 PMSPSAGASS VGGSLWPCQS SPATPTLQLP ISRLKSAINA RDMEIGNGYL MQDQLMDELS 420 ALSLPSRWNS SSAKAAAFAA SSNDRNGEFS RHGGLNPSNL DDILANLDAK ILSQLQGLSL 480 DAVSPQLQSP KAMQMRQNMN QQHMTSYSSG QSSPSFRTSS SYGIDPSNAA ATAVLSSRAA 540 AFAKRSHSFI DRSGAGRLPN ASAVPSNLSG WGSPDGKLDW GIQKEELNKL RKSASFGLRS 600 SGSRFPTTSE ASVSDYSIEP DVSWVQSPDS RQLSMMEDQQ YRLNTSRGSE TMPTWVDQLY 660 MEQEQIVH* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00566 | DAP | Transfer from AT5G58620 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400052841 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006350842.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 66 | ||||
Swissprot | Q9LUZ4 | 0.0 | C3H66_ARATH; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | M1CZB2 | 0.0 | M1CZB2_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400078049 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2558 | 22 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58620.1 | 1e-175 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400052841 |
Publications ? help Back to Top | |||
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