PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400052301 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 274aa MW: 31289.1 Da PI: 9.5857 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 46.7 | 8.6e-15 | 21 | 104 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 +W++ + +Liea ++ rl+rg+l++++W+ev+ + r+ g+ +r+ +qCk++++ l+k+yk +k+ + s++p++++l PGSC0003DMP400052301 21 CWSEGATETLIEAWGDRYLRLNRGNLRQKDWKEVAYSVnsRQNGVkpQRTDVQCKNRIDTLKKKYKLEKNKSTP------SKWPFYNRL 103 7*************************************88777776689*****************99988875......58*****99 PP trihelix 86 e 86 + PGSC0003DMP400052301 104 D 104 7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.4E-26 | 19 | 104 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 274 aa Download sequence Send to blast |
MENQTATQNT SRPHAGGRED CWSEGATETL IEAWGDRYLR LNRGNLRQKD WKEVAYSVNS 60 RQNGVKPQRT DVQCKNRIDT LKKKYKLEKN KSTPSKWPFY NRLDYLIATN NVSASPCNRR 120 PPASISLAVK EKISPDSNFG ALNYSGGSSR LNSSGSNDSS HDDLAFGSGE RKNKMEYVGL 180 SEDTTAFKEL ARAILRFGEI YERIESSKQQ QMMELEKQRM EFTKDLEVQR MNMFMETQLQ 240 IERSKCAAKH PPSAGENFRY LLHLFAFFLA SEK* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00488 | DAP | Transfer from AT5G05550 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400052301 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015166825.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL2 | ||||
Swissprot | Q9LJG8 | 3e-33 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | M1CY12 | 0.0 | M1CY12_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400077199 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13707 | 12 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G05550.1 | 9e-62 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400052301 |
Publications ? help Back to Top | |||
---|---|---|---|
|