PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400052300
Common NameLOC102584643
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 257aa    MW: 29189.7 Da    PI: 9.747
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400052300genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.87.6e-1521104186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                           +W++  + +Liea  ++  rl+rg+l++++W+ev+  +  r+ g+  +r+ +qCk++++ l+k+yk +k+ +        s++p++++l
  PGSC0003DMP400052300  21 CWSEGATETLIEAWGDRYLRLNRGNLRQKDWKEVAYSVnsRQNGVkpQRTDVQCKNRIDTLKKKYKLEKNKSTP------SKWPFYNRL 103
                           7*************************************88777776689*****************99988875......58*****99 PP

              trihelix  86 e 86 
                           +
  PGSC0003DMP400052300 104 D 104
                           7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.0E-2619104No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MENQTATQNT SRPHAGGRED CWSEGATETL IEAWGDRYLR LNRGNLRQKD WKEVAYSVNS  60
RQNGVKPQRT DVQCKNRIDT LKKKYKLEKN KSTPSKWPFY NRLDYLIATN NVSASPCNRR  120
PPASISLAVK EKISPDSNFG ALNYSGGSSR LNSSGSNDSS HDDLAFGSGE RKNKMEYVGL  180
SEDTTAFKEL ARAILRFGEI YERIESSKQQ QMMELEKQRM EFTKDLEVQR MNMFMETQLQ  240
IERSKCAAKH PPSAGK*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400052300
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015166825.10.0PREDICTED: trihelix transcription factor ASIL2
SwissprotQ9LJG82e-33ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLM1CY110.0M1CY11_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000771990.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.26e-62sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]