PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400051825

Common Name

LOC102593487

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Trihelix

Protein Properties

Length: 393aa MW: 45199.7 Da PI: 7.3577

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400051825	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	73.6	3.4e-23	82	170	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +W++++v++Li+a ++++e+ ++ kk++W+++s +m+erg+++sp+qC++k+++lnk++++++++ +++ +++++++ +++++++ PGSC0003DMP400051825 82 KWSDDMVKLLITALSYIGEDALNNGvlVKKGKWRAISCVMSERGYRVSPQQCEDKFNDLNKKFRRLNDILGRGtACNVVENPVLLERMD 170 7**************988776533499****************************************559******99997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	9.1E-21	80	195	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MQVNHHLAGY PNQSPVVLMQ HAPQAMSFGV SNMEDTPQEM QLLGAVRLNR VEMPEAYHEG 60 LNDVREVSGH TEGKQPVYQR MKWSDDMVKL LITALSYIGE DALNNGVLVK KGKWRAISCV 120 MSERGYRVSP QQCEDKFNDL NKKFRRLNDI LGRGTACNVV ENPVLLERMD LPYDLKEEMN 180 KILGSRQLFY EEMCSYNNRN RLFLPHDPVV QQSVFWAVRG KYKYETGSMS QDLPLKRKIG 240 GEERVSNMAC ASLDRTTTAD PNLVQHMPAK RKAGGEERNM HMARLSLNGT TTLDPDPNML 300 YPNSNGIHFS LNNKEKKMQD EHILHRLQQL EEQKLQIQAQ FLELEKQRVN LEISCSEEDM 360 ELQKMQLDNK VIKLENQQLM LELKRGGKQH FV*

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MQVNHHLAGY PNQSPVVLMQ HAPQAMSFGV SNMEDTPQEM QLLGAVRLNR VEMPEAYHEG  60
LNDVREVSGH TEGKQPVYQR MKWSDDMVKL LITALSYIGE DALNNGVLVK KGKWRAISCV  120
MSERGYRVSP QQCEDKFNDL NKKFRRLNDI LGRGTACNVV ENPVLLERMD LPYDLKEEMN  180
KILGSRQLFY EEMCSYNNRN RLFLPHDPVV QQSVFWAVRG KYKYETGSMS QDLPLKRKIG  240
GEERVSNMAC ASLDRTTTAD PNLVQHMPAK RKAGGEERNM HMARLSLNGT TTLDPDPNML  300
YPNSNGIHFS LNNKEKKMQD EHILHRLQQL EEQKLQIQAQ FLELEKQRVN LEISCSEEDM  360
ELQKMQLDNK VIKLENQQLM LELKRGGKQH FV*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00242	DAP	Transfer from AT1G76870	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400051825

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006351819.1	0.0	PREDICTED: uncharacterized protein LOC102593487
Refseq	XP_006351820.1	0.0	PREDICTED: uncharacterized protein LOC102593487
Refseq	XP_006351821.1	0.0	PREDICTED: uncharacterized protein LOC102593487
Refseq	XP_015166145.1	0.0	PREDICTED: uncharacterized protein LOC102593487
TrEMBL	M1CWV8	0.0	M1CWV8_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400076504	0.0	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	1e-63

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400051825
Entrez Gene	102593487

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]