PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400051767
Common NameLOC102595317
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 202aa    MW: 23853.5 Da    PI: 10.1469
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400051767genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.93.2e-33251222102
                           HHHHHHHHHC......TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
          HSF_DNA-bind   2 Flkklyeile......deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 
                           Fl+k+y++le      ++++ +++sw+ +gn fvv+ ++ef++ +LpkyFkh+nf+SF+RQLn+YgFkkv +++         weF+h+
  PGSC0003DMP400051767  25 FLSKTYDLLEeqkeenNNNNIKVVSWNGEGNGFVVWCPDEFSEVMLPKYFKHNNFSSFIRQLNTYGFKKVASKR---------WEFHHE 104
                           9*********6665544477789************************************************999.........****** PP

                           XXXXXXXXXXXXXXXXXX CS
          HSF_DNA-bind  85 sFkkgkkellekikrkks 102
                           +F+kg ++ll +i rkk 
  PGSC0003DMP400051767 105 KFQKGCRHLLAEITRKKC 122
                           ***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.6E-3517114IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-3921120IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.58E-2722120IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.8E-2925120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-106981IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407094IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-108294IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MATDNRNIHR KIGRSTTRMK CPAPFLSKTY DLLEEQKEEN NNNNIKVVSW NGEGNGFVVW  60
CPDEFSEVML PKYFKHNNFS SFIRQLNTYG FKKVASKRWE FHHEKFQKGC RHLLAEITRK  120
KCEPSVFPTY LNPSKKSTLL LARNNQENTT RQLLMEENQN LKKEKMELQL QIAHFKTLEM  180
KLLQCLSQCV ENPHNKTRRL F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdk_A5e-16211207110Heat shock factor protein 2
5hdk_B5e-16211207110Heat shock factor protein 2
5hdk_C5e-16211207110Heat shock factor protein 2
5hdk_D5e-16211207110Heat shock factor protein 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400051767
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2265131e-149AC226513.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0005F12, complete sequence.
GenBankHG9755141e-149HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347051.11e-149PREDICTED: heat stress transcription factor B-2a-like
TrEMBLM1CWQ41e-147M1CWQ4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000764181e-148(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107071823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.14e-37heat shock transcription factor B2A
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]