PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400050448
Common NameLOC102586262
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 485aa    MW: 53619.5 Da    PI: 6.6463
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400050448genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.7e-162067148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+ Ed +l d+vk++G g+W+++ r  g+ R++k+c++rw ++l
  PGSC0003DMP400050448 20 KGPWTAGEDAILMDYVKKHGEGNWNAVQRNSGLMRCGKSCRLRWANHL 67
                          79******************************************9986 PP
2Myb_DNA-binding52.89.4e-1773116146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           +g++T+eE+ +++d++++lG++ W++ a+ ++ gRt++++k++w++
  PGSC0003DMP400050448  73 KGAFTPEEERIIIDLHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 116
                           799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5321567IPR017930Myb domain
SuperFamilySSF466897.49E-3018114IPR009057Homeodomain-like
SMARTSM007173.7E-121969IPR001005SANT/Myb domain
PfamPF002497.1E-142067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-232174IPR009057Homeodomain-like
CDDcd001673.44E-102267No hitNo description
PROSITE profilePS5129426.20468122IPR017930Myb domain
SMARTSM007171.7E-1672120IPR001005SANT/Myb domain
PfamPF002492.4E-1573116IPR001005SANT/Myb domain
CDDcd001675.25E-1275118No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2575121IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MAPDDRGMRN GGGTRQALKK GPWTAGEDAI LMDYVKKHGE GNWNAVQRNS GLMRCGKSCR  60
LRWANHLRPH LKKGAFTPEE ERIIIDLHAK LGNKWARMAA QLPGRTDNEI KNYWNTRLKR  120
RQRAGLPIYP QELQSQNQQE NNQPQSLISS PFDHPQRATY NNPPPLSLLN VFNPSTMRPS  180
ITHQFPLSSN TIFRNPPKGL PLTLPSSLSN SPFLSSMPNN NFGHTLSNLI PMSSFQQNYP  240
NFSLTTRPFM GIPSNQNELM SGIGINSINY PSGPSLMTAS SSENTCSDFG SSDANNYANV  300
GLSQGNSGLL EDLLKGAQNL SRSTKNEENN NLDLNEKGKS LWQDYGLVGN HQDEAILTEE  360
SVYSFAHGGD VNLNNSSESS STDPNASSGI FLRKEGSLQG INQVDEHIMC LLNNYPLDQE  420
PVPNWYDESD DKKINSKIGA DDHKAESLVE DSSKSQVAIT TTSGPKQHDW ELGGCCWNNM  480
PPFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29181215107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400050448
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366585.10.0PREDICTED: transcription factor RAX3
TrEMBLM1CTR20.0M1CTR2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000744860.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.22e-69myb domain protein 101
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]