PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400050061

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

HB-other

Protein Properties

Length: 720aa MW: 81505.8 Da PI: 8.3501

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400050061	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	38.3	2.2e-12	503	547	9	53
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ +eeL ++F++n ps+e re L+k+lg++ ++V WF+N R+ PGSC0003DMP400050061 503 PDAVEELRRVFAENELPSREVRENLSKQLGIEFEKVNKWFKNARY 547 6889****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	2.19E-9	212	257	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	2.4E-7	212	266	IPR013083	Zinc finger, RING/FYVE/PHD-type
SMART	SM00249	0.0099	220	269	IPR001965	Zinc finger, PHD-type
CDD	cd15504	3.76E-19	221	260	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.6E-13	488	546	IPR009057	Homeodomain-like
PROSITE profile	PS50071	12.908	492	552	IPR001356	Homeobox domain
SMART	SM00389	3.0E-11	494	556	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.12E-11	495	557	IPR009057	Homeodomain-like
CDD	cd00086	1.24E-9	495	547	No hit	No description
Pfam	PF00046	7.4E-10	503	547	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 720 aa Download sequence Send to blast
MMPGKTDKDM HKAVASSSQV KNVLRRLEKK RSRLKSKSHG RSTHASLSRR TVASDGKGKC 60 CSGENILKKE ILKKAKSSKK QSVLSCEGEK LQACNSKDNL KHDNLDTGSE KLKRRRKRRR 120 RKHNSDPDDV SRLQRRTRYL LIKMKLEQNL IDAYSAEGWK GQSREKIRPE RELQRAKKQI 180 LNCKLGIREI VHHLDLLSSA GQIDDSAIAP DGSVHHEHII CAKCKLQEAF PDNDIILCDG 240 TCNCAFHQEC LDPPLSTENK QNFTPESHNF CLAKWLLAHI LFMRTYSKRN DNLQYRQMMK 300 AGFANFASNI FKEEALLPEG EESLLCPEQD WPSDDSEDDD YDPEKVANSH SSTDSFESGS 360 SSEASSGSML GSLEDELLAL TGKLEDGSGG KDYLSEQIAG SDYEETTDFE VLSGPRQRKA 420 VDYIKLNDEM FGKHAPAIEQ NSEDEDWGPG KRKRRRKEPE SDAASTLITL FESERSCPEK 480 TVDEVEKESL GRPAKREIFR IPPDAVEELR RVFAENELPS REVRENLSKQ LGIEFEKVNK 540 WFKNARYTAL KARKVEGTKP CQATSPTTSV GCTPETVKGE PADHISSSDA EENAAQTPNE 600 ETPNLVIRPS KKKHDKKAVI TSTDRAETLV ESGDDVSLKL LRDRAKKQRR KINSKEREKI 660 KEAEAEAEMQ ELCRIKDKIA RLQDVLRRFP NRRCRRADTS SLDESLVVFI PVAQLQEKR*

Sequence ? help Back to Top

Protein Sequence Length: 720 aa Download sequence Send to blast

MMPGKTDKDM HKAVASSSQV KNVLRRLEKK RSRLKSKSHG RSTHASLSRR TVASDGKGKC  60
CSGENILKKE ILKKAKSSKK QSVLSCEGEK LQACNSKDNL KHDNLDTGSE KLKRRRKRRR  120
RKHNSDPDDV SRLQRRTRYL LIKMKLEQNL IDAYSAEGWK GQSREKIRPE RELQRAKKQI  180
LNCKLGIREI VHHLDLLSSA GQIDDSAIAP DGSVHHEHII CAKCKLQEAF PDNDIILCDG  240
TCNCAFHQEC LDPPLSTENK QNFTPESHNF CLAKWLLAHI LFMRTYSKRN DNLQYRQMMK  300
AGFANFASNI FKEEALLPEG EESLLCPEQD WPSDDSEDDD YDPEKVANSH SSTDSFESGS  360
SSEASSGSML GSLEDELLAL TGKLEDGSGG KDYLSEQIAG SDYEETTDFE VLSGPRQRKA  420
VDYIKLNDEM FGKHAPAIEQ NSEDEDWGPG KRKRRRKEPE SDAASTLITL FESERSCPEK  480
TVDEVEKESL GRPAKREIFR IPPDAVEELR RVFAENELPS REVRENLSKQ LGIEFEKVNK  540
WFKNARYTAL KARKVEGTKP CQATSPTTSV GCTPETVKGE PADHISSSDA EENAAQTPNE  600
ETPNLVIRPS KKKHDKKAVI TSTDRAETLV ESGDDVSLKL LRDRAKKQRR KINSKEREKI  660
KEAEAEAEMQ ELCRIKDKIA RLQDVLRRFP NRRCRRADTS SLDESLVVFI PVAQLQEKR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	121	RRRKRRRRK
2	450	455	KRKRRR
3	450	456	KRKRRRK
4	451	455	RKRRR
5	451	457	RKRRRKE

Functional Description ? help Back to Top
Source	Description
UniProt	Specifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400050061

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By pathogen infection.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975446	0.0	HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBank	HG975519	0.0	HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006361653.1	0.0	PREDICTED: pathogenesis-related homeodomain protein isoform X2
Swissprot	P48785	1e-115	PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBL	M1CSX0	0.0	M1CSX0_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400073955	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10684	21	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.2	5e-65	pathogenesis related homeodomain protein A

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400050061

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]