PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400049560
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 300aa    MW: 33568.5 Da    PI: 6.1636
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400049560genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.4e-3077135259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY+ eHnh+
  PGSC0003DMP400049560  77 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPNMLVVTYSCEHNHP 135
                           69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-3173137IPR003657WRKY domain
SuperFamilySSF1182902.22E-2675137IPR003657WRKY domain
SMARTSM007744.2E-3676136IPR003657WRKY domain
PROSITE profilePS5081132.40977137IPR003657WRKY domain
PfamPF031063.8E-2678135IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDGRFNNFFV SEQEDSENSP ENSSDSPRSG LFNDNKMMTS TSSPKRSRRS IEKRVVSVPI  60
KEVEGSKMKG EISMPPSDSW AWRKYGQKPI KGSPYPRGYY RCSSSKGCPA RKQVERSRAD  120
PNMLVVTYSC EHNHPWPASR NNQHNHRTSC IINNNTKTKM KTIASLTTTT IIASTTISDI  180
AVSKEKITSD FTRPSEPNSD EKFVNLSESS SSLISANEFG WFSDLIECTS TTMLESPILT  240
EVDCDIDMSS TLTMREEDVS LFADLGELPE CSTVFGRGMM ERDEERRRLS LTPWCGTTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-2266137379Disease resistance protein RRS1
5w3x_D3e-2266137379Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400049560
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0569170.0EU056917.1 Solanum tuberosum WRKY transcription factor 5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001274847.10.0WRKY transcription factor 5
SwissprotQ9LP561e-74WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLM1CRQ00.0M1CRQ0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000732670.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64752333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.11e-56WRKY DNA-binding protein 69
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]