PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400049433
Common NameLOC102593932
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 409aa    MW: 46220.4 Da    PI: 5.1022
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400049433genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.21.8e-35141062102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX.XXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks.Fkkg 89 
                           Fl k+ye+++d++ + ++sws+n++sf+v+++ +fa+++Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++s F +g
  PGSC0003DMP400049433  14 FLAKTYEMVDDPSCDAIVSWSSNNKSFIVWNPPDFARDLLPRYFKHNNFSSFIRQLNTYGFRKIDPEK---------WEFANESnFIRG 93 
                           9****************************************************************999.........*****999**** PP

                           XXXXXXXXXXXXX CS
          HSF_DNA-bind  90 kkellekikrkks 102
                           + +ll++i+r+k 
  PGSC0003DMP400049433  94 QPHLLKNIHRRKP 106
                           **********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.27E-3510104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.5E-6110104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.9E-3811104IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.5E-3114104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MDEASCSTNA LPPFLAKTYE MVDDPSCDAI VSWSSNNKSF IVWNPPDFAR DLLPRYFKHN  60
NFSSFIRQLN TYGFRKIDPE KWEFANESNF IRGQPHLLKN IHRRKPVHSH SAQNLHGLSS  120
PLTESERHGY KEDIQKLMHE NGSLHLDLQR HKQDHQGLEL QMQVLTERVQ HAEHRQKTML  180
SALAQTLDKP VMDLSHMPQL QVNDRKRRFP GNSCLYNESD LEDMRGISSR ALSRENMNPS  240
SLLTMNTELL DQLESSLTFW EDVLQDVDQA GIRQNCSLEL DESTSCADSP AISYTQLNVD  300
VGPKASGIDM NSEPNANTTP EVAEPEDKAA VAETATNVPT GVNDLFWEQF LTENPGSVDA  360
PEVQSERKDI GSKKNESKPV DSGKYWWNMK SVNSLAEQMG HLTPAEKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-231110426129Heat shock factor protein 1
5d5v_B4e-231110426129Heat shock factor protein 1
5d5v_D4e-231110426129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400049433
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358092.10.0PREDICTED: heat stress transcription factor A-4a
RefseqXP_006358093.10.0PREDICTED: heat stress transcription factor A-4a
RefseqXP_015169267.10.0PREDICTED: heat stress transcription factor A-4a
RefseqXP_015169268.10.0PREDICTED: heat stress transcription factor A-4a
TrEMBLM1CRG00.0M1CRG0_SOLTU; Uncharacterized protein
STRINGSolyc02g072000.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-114heat shock transcription factor A4A
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]