PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400049170
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 137aa    MW: 16104.7 Da    PI: 10.5905
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400049170genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.4e-151461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg W +eEde+l   v  +G ++W++ a+t g++R++k+c++rw++yl
  PGSC0003DMP400049170 14 RGQWLEEEDERLSMMVGVFGERRWDALAKTSGLKRSGKSCRLRWLNYL 61
                          899********************************************7 PP
2Myb_DNA-binding51.91.7e-1670112448
                           S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            T++E+ l++++ kq+G++ W++Ia+ ++ gRt++++k++w+++l
  PGSC0003DMP400049170  70 ITADEERLIIRLQKQFGNK-WSKIAKQLP-GRTDNEIKNYWRSHL 112
                           59*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.268961IPR017930Myb domain
SuperFamilySSF466895.24E-2712108IPR009057Homeodomain-like
SMARTSM007173.2E-101363IPR001005SANT/Myb domain
PfamPF002492.3E-121461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-201568IPR009057Homeodomain-like
CDDcd001673.01E-71761No hitNo description
PROSITE profilePS5129425.89462116IPR017930Myb domain
SMARTSM007171.0E-1566114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-2569115IPR009057Homeodomain-like
PfamPF002491.2E-1470112IPR001005SANT/Myb domain
CDDcd001672.32E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MASQLTMQEE ELRRGQWLEE EDERLSMMVG VFGERRWDAL AKTSGLKRSG KSCRLRWLNY  60
LRPNLKHGHI TADEERLIIR LQKQFGNKWS KIAKQLPGRT DNEIKNYWRS HLRKKTLIYK  120
QGLLENTLLV DIVSVP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-28111161105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400049170
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754496e-67HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBankHG9755226e-67HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015166129.12e-84PREDICTED: myb-related protein MYBAS1
SwissprotQ9SCP12e-49MYB27_ARATH; Transcription factor MYB27
TrEMBLM1CQR88e-95M1CQR8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000726871e-95(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.17e-52myb domain protein 27
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]