PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400048631
Common NameLOC102583721
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 161aa    MW: 17989.3 Da    PI: 4.6409
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400048631genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.40.00059444854
                          HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                          rE++R + + ++++ Lr++  + a       ls ++i   A +YI++L
  PGSC0003DMP400048631  4 REQKRASVLHDKLQLLRSITKShA-------LSESSIIVDASKYIQEL 44
                          8******************98855.......***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-6361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-5457IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.0010585139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MVSREQKRAS VLHDKLQLLR SITKSHALSE SSIIVDASKY IQELKQKVER LNEDITTTTT  60
PQTNSNNKTS SWPQIEVETL EKGFLVNVYS ERSCPGLLVS ILQVLEDLSL NVLEARVSCT  120
DTFRLQAFGG EDEETMINAQ VVTEAVFEAI KNWSESKEQG *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400048631
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2192256e-83AC219225.1 Solanum lycopersicum chromosome 6 clone C06SLm0082G10, complete sequence.
GenBankHG9754456e-83HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755186e-83HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366579.11e-114PREDICTED: transcription factor SCREAM2-like
TrEMBLM1CPH71e-112M1CPH7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000719141e-113(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2945911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10570.19e-09bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]