PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G10570.1
Common NameBHLH61, EN46, F12B17.80
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 315aa    MW: 35554.2 Da    PI: 4.7971
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G10570.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.1e-12153196654
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   ++ErrRR+r+N++++ Lr+++Pk      +K++  +iL  A++Y+k+L
  AT5G10570.1 153 LMAERRRRKRLNDRLSLLRSIVPKI-----TKMDRTSILGDAIDYMKEL 196
                  589*********************7.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-16150214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-10153196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-12153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.95E-5154196No hitNo description
Gene3DG3DSA:4.10.280.101.1E-15154211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
METELTQLRK QESNNLNGVN GGFMAIDQFV PNDWNFDYLC FNNLLQEDDN IDHPSSSSLM  60
NLISQPPPLL HQPPQPSSPL YDSPPLSSAF DYPFLEDIIH SSYSPPPLIL PASQENTNNY  120
SPLMEESKSF ISIGETNKKR SNKKLEGQPS KNLMAERRRR KRLNDRLSLL RSIVPKITKM  180
DRTSILGDAI DYMKELLDKI NKLQEDEQEL GSNSHLSTLI TNESMVRNSL KFEVDQREVN  240
THIDICCPTK PGLVVSTVST LETLGLEIEQ CVISCFSDFS LQASCFEVGE QRYMVTSEAT  300
KQALIRNAGY GGRCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137159KKRSNKKLEGQPSKNLMAERRRR
2155162ERRRRKRL
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAT5G10570
AtGenExpressAT5G10570
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in leaves and flowers. {ECO:0000269|PubMed:12679534}.
Function -- GeneRIF ? help Back to Top
  1. AtVip2 (At5g10570) is differentially expressed in plant tissues and play a role in inositol pyrophosphate synthesis
    [PMID: 25231822]
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G10570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G10570
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885940.0AF488594.1 Arabidopsis thaliana clone bHLH061 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_196619.10.0basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ9LXA90.0BH061_ARATH; Transcription factor bHLH61
TrEMBLA0A178UKE20.0A0A178UKE2_ARATH; Uncharacterized protein
STRINGAT5G10570.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Representative plantOGRP26361130
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Sorensen AM, et al.
    The Arabidopsis ABORTED MICROSPORES (AMS) gene encodes a MYC class transcription factor.
    Plant J., 2003. 33(2): p. 413-23
    [PMID:12535353]
  3. Chinnusamy V, et al.
    ICE1: a regulator of cold-induced transcriptome and freezing tolerance in Arabidopsis.
    Genes Dev., 2003. 17(8): p. 1043-54
    [PMID:12672693]
  4. Heim MA, et al.
    The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.
    Mol. Biol. Evol., 2003. 20(5): p. 735-47
    [PMID:12679534]
  5. Toledo-Ortiz G,Huq E,Quail PH
    The Arabidopsis basic/helix-loop-helix transcription factor family.
    Plant Cell, 2003. 15(8): p. 1749-70
    [PMID:12897250]
  6. Bailey PC, et al.
    Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana.
    Plant Cell, 2003. 15(11): p. 2497-502
    [PMID:14600211]
  7. Czechowski T,Bari RP,Stitt M,Scheible WR,Udvardi MK
    Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes.
    Plant J., 2004. 38(2): p. 366-79
    [PMID:15078338]
  8. Scheible WR, et al.
    Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen.
    Plant Physiol., 2004. 136(1): p. 2483-99
    [PMID:15375205]
  9. Efroni I, et al.
    Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
    Dev. Cell, 2013. 24(4): p. 438-45
    [PMID:23449474]
  10. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  11. Desai M, et al.
    Two inositol hexakisphosphate kinases drive inositol pyrophosphate synthesis in plants.
    Plant J., 2014. 80(4): p. 642-53
    [PMID:25231822]