PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400048525 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | AP2 | ||||||||
Protein Properties | Length: 458aa MW: 50066.6 Da PI: 7.0773 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3.2e-17 | 129 | 178 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g PGSC0003DMP400048525 129 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 178 78*******************......55************************998 PP | |||||||
2 | AP2 | 42.2 | 2e-13 | 221 | 271 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g PGSC0003DMP400048525 221 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 271 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.86E-16 | 129 | 188 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.1E-9 | 129 | 178 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-17 | 130 | 187 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.00E-11 | 130 | 188 | No hit | No description |
PROSITE profile | PS51032 | 17.82 | 130 | 186 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.6E-32 | 130 | 192 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-17 | 221 | 281 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.40E-25 | 221 | 281 | No hit | No description |
Pfam | PF00847 | 4.9E-9 | 221 | 271 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.0E-16 | 222 | 280 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.514 | 222 | 279 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-31 | 222 | 285 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-6 | 223 | 234 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-6 | 261 | 281 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
METVTASGKL KELSFGQIEN SGTSNSSIVN VETSSTAGDD EFISCSDQRT DGYAFEILRA 60 DYEGNGFVTK ELFPLTGGES AAPPSQQQQW LDLSGNYSDV PMEQRIVLGP PQLRQQVKKS 120 RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD TAHAAARAYD RAAIKFRGLD 180 ADINFNVSDY HDDLKQMGNF SKEEFVHVLR RQSTGFSRGS SKYRGVTLHK CGRWEARMGQ 240 FLGKKYIYLG LFDSEIEAAR AYDKAAIKCN GREAVTNFEL STYEGELSTE ADNGGADHNL 300 DLNLGIAPSV FADDQGGNTC QMGNYVVQCV SNGLPGYGGA MNIPTTTMGG KLLHGHQLLT 360 DRPLLWNGVN TSIFPTLKGT ALGKGIEVDS SPNWTRQDQH PYGGSPSVPL FSTAASSGFA 420 NTTTAAAQLP CFSNGKLPYQ HSPSLANMNF AHYYCRS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400048525 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FM246879 | 0.0 | FM246879.2 Solanum tuberosum subsp. andigena mRNA for relative to APETALA2 1 (rap1 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015086400.1 | 0.0 | ethylene-responsive transcription factor RAP2-7-like | ||||
Refseq | XP_015086406.1 | 0.0 | ethylene-responsive transcription factor RAP2-7-like | ||||
Swissprot | B8AXC3 | 1e-102 | AP21_ORYSI; APETALA2-like protein 1 | ||||
TrEMBL | M1CP82 | 0.0 | M1CP82_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400071732 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA591 | 24 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-106 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400048525 |
Publications ? help Back to Top | |||
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