PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400048436
Common NameLOC102588141
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 376aa    MW: 41609.3 Da    PI: 4.7972
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400048436genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM25.34.2e-082011811128
                   NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                           d+e+    L++  +g++++  +vi++ + yk++P++Lp       +  +f +++ +        +++t+ g W+ + +  e+++ ++  
  PGSC0003DMP400048436  20 DDEIF-LVLNQINRGSPIPD-DVIED-NPYKYDPSNLP-------DGAWFLVRKTE--------QKSTEYGLWRVKDSACEIFA-NSDI 89 
                           55555.44666666777766.65655.999999***99.......23345554433........346899**************.9999 PP

                   NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                            g ++t+ f+  +a+  +kt  +mhey++
  PGSC0003DMP400048436  90 SGWRTTFEFFLVQASIEQKTVCIMHEYKV 118
                           ***************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.2859140IPR003441NAC domain
SuperFamilySSF1019412.35E-1119138IPR003441NAC domain
PfamPF023653.5E-419117IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MRPLSPSAPP PGLMSSYGTD DEIFLVLNQI NRGSPIPDDV IEDNPYKYDP SNLPDGAWFL  60
VRKTEQKSTE YGLWRVKDSA CEIFANSDIS GWRTTFEFFL VQASIEQKTV CIMHEYKVTP  120
KGKHDLTKSQ ESTLCRFFGL WNGAEQDEVR HLLGYFSLIP SANPDTSGND GQRSIAEPQV  180
NRQIEGAGSS LVDKSIDQFV DDKEAEIDCI IRGDYLELDD LIDGASHDSS SSENTSRQSF  240
ASDEFFNSRA LLAELDDEKK EDLSGKGSTS NHSIMMCQIA NDVVVQPGPL GFLIKGSDAK  300
AKETQQAPDI YKSKSQDQAA KKLKAERTDE GPSHARRATT SSSSSNSSCD EPGRAARREA  360
KRSKKLMKFL CFMPF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400048436
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-101HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006367296.10.0PREDICTED: uncharacterized protein LOC102588141 isoform X1
TrEMBLM1CP100.0M1CP10_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000715970.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112072123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.22e-08NAC domain containing protein 38
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]