PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400048368 | ||||||||
Common Name | LOC102582897 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HSF | ||||||||
Protein Properties | Length: 404aa MW: 46213.6 Da PI: 4.9614 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111.7 | 5.1e-35 | 14 | 105 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 F+ k+ye+++d++++ ++sws+n++sf+vl++ +fa+++Lp+yFkh+nf+SF+RQLn+YgFkk++ e+ weF+++ F +g+ PGSC0003DMP400048368 14 FIAKIYEMVDDPSTDPIVSWSSNNKSFIVLNPPDFARDLLPRYFKHNNFSSFIRQLNTYGFKKIDPEQ---------WEFANEDFLRGQ 93 9***************************************************************9998.........************ PP XXXXXXXXXXXX CS HSF_DNA-bind 91 kellekikrkks 102 +ll++i r+k PGSC0003DMP400048368 94 PHLLKNIYRRKP 105 *********985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 8.2E-38 | 9 | 98 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.0E-60 | 10 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 6.39E-36 | 10 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.0E-19 | 14 | 37 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 5.9E-31 | 14 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-19 | 52 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 53 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-19 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MDEAPCSVNA LPPFIAKIYE MVDDPSTDPI VSWSSNNKSF IVLNPPDFAR DLLPRYFKHN 60 NFSSFIRQLN TYGFKKIDPE QWEFANEDFL RGQPHLLKNI YRRKPVHSHS VQNIHILSSS 120 ALTESERQGY KEDIEKLKHE NESLHLVLHR HKQDHQGLEM QMQVLNQRVQ QVKDRQKNVL 180 STLARTINKP GLALSLMPQL EMNERKRRLP GNSFLYNETG LEDNQASSSE NSTRENMDPT 240 SLLTLNKEVL DQLEPSLTFW EYTLRDIDQA RMRQSSSIDL DESISCADSP AISYPQLTVD 300 VGSKVSDIDM NSEPNGNTTP DVTPPENRVE TASNNVPTGV NDVFWEQFLT ENPGSTDVKP 360 EREDMESKIS ESKTVEDGKF WWNRKTVISL TEQLGHLTPA ERM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-24 | 11 | 103 | 26 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-24 | 11 | 103 | 26 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-24 | 11 | 103 | 26 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 203 | 208 | ERKRRL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00443 | DAP | Transfer from AT4G18880 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400048368 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT014619 | 0.0 | BT014619.1 Lycopersicon esculentum clone 134122F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015168157.1 | 0.0 | PREDICTED: heat stress transcription factor A-4a-like | ||||
Refseq | XP_015168158.1 | 0.0 | PREDICTED: heat stress transcription factor A-4a-like | ||||
TrEMBL | M1CNW0 | 0.0 | M1CNW0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400071487 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18880.1 | 1e-107 | heat shock transcription factor A4A |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400048368 |
Entrez Gene | 102582897 |
Publications ? help Back to Top | |||
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