PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400048367
Common NameLOC102582897
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 404aa    MW: 46213.6 Da    PI: 4.9614
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400048367genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.75.1e-35141052102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           F+ k+ye+++d++++ ++sws+n++sf+vl++ +fa+++Lp+yFkh+nf+SF+RQLn+YgFkk++ e+         weF+++ F +g+
  PGSC0003DMP400048367  14 FIAKIYEMVDDPSTDPIVSWSSNNKSFIVLNPPDFARDLLPRYFKHNNFSSFIRQLNTYGFKKIDPEQ---------WEFANEDFLRGQ 93 
                           9***************************************************************9998.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                            +ll++i r+k 
  PGSC0003DMP400048367  94 PHLLKNIYRRKP 105
                           *********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.2E-38998IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-6010103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.39E-3610103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.0E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.9E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MDEAPCSVNA LPPFIAKIYE MVDDPSTDPI VSWSSNNKSF IVLNPPDFAR DLLPRYFKHN  60
NFSSFIRQLN TYGFKKIDPE QWEFANEDFL RGQPHLLKNI YRRKPVHSHS VQNIHILSSS  120
ALTESERQGY KEDIEKLKHE NESLHLVLHR HKQDHQGLEM QMQVLNQRVQ QVKDRQKNVL  180
STLARTINKP GLALSLMPQL EMNERKRRLP GNSFLYNETG LEDNQASSSE NSTRENMDPT  240
SLLTLNKEVL DQLEPSLTFW EYTLRDIDQA RMRQSSSIDL DESISCADSP AISYPQLTVD  300
VGSKVSDIDM NSEPNGNTTP DVTPPENRVE TASNNVPTGV NDVFWEQFLT ENPGSTDVKP  360
EREDMESKIS ESKTVEDGKF WWNRKTVISL TEQLGHLTPA ERM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-241110326129Heat shock factor protein 1
5d5v_B1e-241110326129Heat shock factor protein 1
5d5v_D1e-241110326129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203208ERKRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400048367
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0146190.0BT014619.1 Lycopersicon esculentum clone 134122F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168157.10.0PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_015168158.10.0PREDICTED: heat stress transcription factor A-4a-like
TrEMBLM1CNW00.0M1CNW0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000714870.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34482344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-107heat shock transcription factor A4A
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]