PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400047930 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bZIP | ||||||||
Protein Properties | Length: 246aa MW: 27839.7 Da PI: 8.1998 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.4 | 4.9e-11 | 77 | 107 | 3 | 33 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee 33 ++k++rr+++NReAAr+sR RKka++++Le+ PGSC0003DMP400047930 77 SDKAQRRLAQNREAARKSRMRKKAYVQQLET 107 79***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.3E-5 | 75 | 135 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.6E-7 | 77 | 109 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.013 | 77 | 121 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.75E-8 | 79 | 114 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.0E-8 | 79 | 121 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 82 | 97 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 1.1E-28 | 165 | 237 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MTSPTTQFAP TRRMGIYEPF HQMSVWEDAF RGDIMPSADA CMVSHPNDRP DDKSGYTSGE 60 QHMPSGSGDN QAPRSSSDKA QRRLAQNREA ARKSRMRKKA YVQQLETSRL KLAQLELELE 120 RARQQGLYML GSNSNMGLLG TINPGIAAFE IEYSQWVEEQ QKKNAELRSI LQSPVSDMEL 180 QLLVENVLSH YFNLFRMKAD AAKADVFYLM SGMWRTSVER FFLWLGGFKP SELINVVPGA 240 LYCLL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00586 | DAP | Transfer from AT5G65210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400047930 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT014216 | 0.0 | BT014216.1 Lycopersicon esculentum clone 133394F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006354048.1 | 1e-178 | PREDICTED: transcription factor TGA4-like isoform X1 | ||||
Swissprot | Q39237 | 1e-89 | TGA1_ARATH; Transcription factor TGA1 | ||||
TrEMBL | M1CMW3 | 0.0 | M1CMW3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400070884 | 1e-177 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65210.5 | 6e-78 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400047930 |