PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400047457 | ||||||||
Common Name | LOC102601498 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HSF | ||||||||
Protein Properties | Length: 248aa MW: 28695.6 Da PI: 9.022 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.2 | 3.6e-35 | 29 | 120 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 Fl k+y ++ed+++++++sw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+k+++++ weF++++Fkkg+ PGSC0003DMP400047457 29 FLLKTYMLVEDPATDDVVSWNSDGSAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKITTSR---------WEFSNDKFKKGE 108 9****************************************************************999.........************ PP XXXXXXXXXXXX CS HSF_DNA-bind 91 kellekikrkks 102 k+ll++i+r+k PGSC0003DMP400047457 109 KNLLREIRRRKA 120 *********985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 4.35E-33 | 24 | 118 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.3E-52 | 25 | 118 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.1E-36 | 25 | 118 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 3.2E-31 | 29 | 118 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-18 | 29 | 52 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-18 | 67 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 68 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-18 | 80 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MEVLEEVQVS DEKSLLEYVV MKKSSPSPFL LKTYMLVEDP ATDDVVSWNS DGSAFVVWQP 60 AEFARDLLPT LFKHSNFSSF VRQLNTYGFR KITTSRWEFS NDKFKKGEKN LLREIRRRKA 120 WTNRQQPNNG GQSQDANSNN KKDNITEEDQ RSSSSTSSSS EYINLVDENK RLKMENGVLS 180 SELSLMKNKC KELMNIVTIF AKIPEKEEEK KPMLFGVRLE VKEEMERKRK RVELNEIASV 240 FLSQLCK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 3e-20 | 29 | 118 | 20 | 120 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00305 | DAP | Transfer from AT2G41690 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400047457 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 1e-152 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. | |||
GenBank | HG975516 | 1e-152 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006350178.1 | 0.0 | PREDICTED: heat stress transcription factor B-3 | ||||
Swissprot | O22230 | 3e-66 | HSFB3_ARATH; Heat stress transcription factor B-3 | ||||
TrEMBL | M1CLT1 | 1e-179 | M1CLT1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400070196 | 1e-180 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4423 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41690.1 | 9e-64 | heat shock transcription factor B3 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400047457 |
Entrez Gene | 102601498 |
Publications ? help Back to Top | |||
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