PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400047344 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C2H2 | ||||||||
Protein Properties | Length: 257aa MW: 29018.1 Da PI: 8.8046 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.1 | 0.0012 | 195 | 217 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+ +Fs+ L H ++ H PGSC0003DMP400047344 195 PCPQCHLRFSTVRALIDHVQKvH 217 5*****************99988 PP | |||||||
2 | zf-C2H2 | 15.6 | 4.7e-05 | 229 | 251 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+k F+++ L+ H + H PGSC0003DMP400047344 229 VCPRCSKGFRDPVALVEHVEReH 251 7*****************99888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1110.10 | 1.6E-10 | 69 | 128 | IPR000058 | Zinc finger, AN1-type |
SuperFamily | SSF118310 | 2.35E-9 | 72 | 128 | No hit | No description |
SMART | SM00154 | 0.007 | 80 | 121 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 3.3E-8 | 80 | 120 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00355 | 0.036 | 194 | 217 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13894 | 9.0E-4 | 195 | 217 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 196 | 217 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 7.1 | 228 | 251 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.974 | 228 | 256 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 230 | 251 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MLNVLTYNTS LQVYCLDHRS YIRHQCPTAN KNNVTVVICP LCAKGVRLNP VEDPNITWES 60 HVNTECDPSN YEKATKKKKC PVPRCKELLT FSNTIKCRDC TVDHCLKHRF GPDHSCPGPK 120 KPESTFQFMN FLNGSKEESK KAQPTTTSRW TTSLLKVVTS VKEKFNSEFN QPQQTGQSSR 180 ATNHSVTNNS SQVEPCPQCH LRFSTVRALI DHVQKVHEKN GVMNMTIDVC PRCSKGFRDP 240 VALVEHVERE HKGSSM* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00306 | DAP | Transfer from AT2G41835 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400047344 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006350207.1 | 0.0 | PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like | ||||
Swissprot | Q8VZ42 | 1e-100 | SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 | ||||
TrEMBL | M1CLM6 | 0.0 | M1CLM6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400070044 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41835.1 | 1e-103 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400047344 |
Publications ? help Back to Top | |||
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