PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400047012
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 448aa    MW: 50036.8 Da    PI: 4.4435
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400047012genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.91.4e-12259281426
                           ---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                           + C ++++tGtC+yG +CkF+H+
  PGSC0003DMP400047012 259 VDCAYYMKTGTCQYGLNCKFNHP 281
                           68********************8 PP
2zf-CCCH309.2e-10307329527
                           --SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                           +C++++ +G CkyG+ Ck++H++
  PGSC0003DMP400047012 307 ECKYYLTGGGCKYGNACKYSHSK 329
                           6********************95 PP
3zf-CCCH40.54.4e-13350374226
                           -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                           +++ C+f++rtG CkyG++C+F+H+
  PGSC0003DMP400047012 350 GEKDCPFYMRTGSCKYGSNCRFHHP 374
                           6789********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.76255283IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5255282IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6257285IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-10259281IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4261280IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011302329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.882302330IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5307329IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7307329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-5308329IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-7348375IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.502348376IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-10350374IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-7350376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-5354373IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MEAIQSLYMH NLNQPTLDKQ YLGFDPQPPE AASFSSEPNL QNPSRDLPKA EENDVDDDDE  60
MLLRIIFEEL QNLVLNQAFS EERTKGGVYE SIKAKSESED EKDVQMIVEE LKNLVVNQAF  120
SEERAKGDIH EGNGRDEVGN EYGGNHYEDG AGWSENENVI DVKNEKGGEV VSREWGFDHY  180
EDGDYSWSES GIVVDVENEK GGEVGSKEWG FDHYEDGDLS WSGNGIDVTN ENGSKAGSKE  240
WGFNANGRRL NYPLRPDAVD CAYYMKTGTC QYGLNCKFNH PSRRQNQWAM EKGKQRDESE  300
ERAGLIECKY YLTGGGCKYG NACKYSHSKR NGAISPVLDF NFLGLPIRQG EKDCPFYMRT  360
GSCKYGSNCR FHHPDPTTMT GNNPSLGYNN GGSAPVQSAS YSPVSSWSSP RASNETAPFV  420
PVVYPANQGI LPLSPEWNRF QVIYVLI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400047012
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347414.10.0PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X1
TrEMBLM1CKS80.0M1CKS8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000696260.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.18e-63C3H family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]