PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400046967
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 285aa    MW: 31977.2 Da    PI: 7.2657
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400046967genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.8e-09135182455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  PGSC0003DMP400046967 135 SHSLAERVRREKISERMKILQALVPGC----DKVTGKALMLDEIINYVQSLQ 182
                           8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-17129199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.96E-10129186No hitNo description
Gene3DG3DSA:4.10.280.101.0E-16131199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.542131181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-6135182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-10137187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEANSNSFHL DSIFHVPIKL SGFLEEPNNM TCSTVLPNCV SQFYLQELSV NMSNNVHEIS  60
QNEPSHVTNK TISSSLCSTQ SKNVREGDYG KRQKKRNGNV KIEKKAKDNN KKKVPEEAPT  120
GYVHVRARRG QATDSHSLAE RVRREKISER MKILQALVPG CDKVTGKALM LDEIINYVQS  180
LQNQVEFLSM KLASLNPMYY DFGMELDALM VKPDQSWSGL EGPLLENTTS SYPLLDSSTS  240
HMFQQLHLPN SVSQDSGDDQ KQKMIINHSE LISNNNNLCS FPLI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400046967
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE6539241e-105HE653924.1 Nicotiana tabacum mRNA for bHLH trascription factor (upp-L gene), cultivar Samsun nn.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164223.10.0PREDICTED: transcription factor bHLH137, partial
SwissprotQ93W881e-58BH137_ARATH; Transcription factor bHLH137
TrEMBLM1CKP30.0M1CKP3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000695680.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.27e-60bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]