PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400046966 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 285aa MW: 31977.2 Da PI: 7.2657 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.5 | 2.8e-09 | 135 | 182 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+ l+P + +k Ka +L + ++Y++sLq PGSC0003DMP400046966 135 SHSLAERVRREKISERMKILQALVPGC----DKVTGKALMLDEIINYVQSLQ 182 8*************************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.09E-17 | 129 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.96E-10 | 129 | 186 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.0E-16 | 131 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.542 | 131 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-6 | 135 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-10 | 137 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MEANSNSFHL DSIFHVPIKL SGFLEEPNNM TCSTVLPNCV SQFYLQELSV NMSNNVHEIS 60 QNEPSHVTNK TISSSLCSTQ SKNVREGDYG KRQKKRNGNV KIEKKAKDNN KKKVPEEAPT 120 GYVHVRARRG QATDSHSLAE RVRREKISER MKILQALVPG CDKVTGKALM LDEIINYVQS 180 LQNQVEFLSM KLASLNPMYY DFGMELDALM VKPDQSWSGL EGPLLENTTS SYPLLDSSTS 240 HMFQQLHLPN SVSQDSGDDQ KQKMIINHSE LISNNNNLCS FPLI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400046966 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HE653924 | 1e-105 | HE653924.1 Nicotiana tabacum mRNA for bHLH trascription factor (upp-L gene), cultivar Samsun nn. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015164223.1 | 0.0 | PREDICTED: transcription factor bHLH137, partial | ||||
Swissprot | Q93W88 | 1e-58 | BH137_ARATH; Transcription factor bHLH137 | ||||
TrEMBL | M1CKP3 | 0.0 | M1CKP3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400069568 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4116 | 23 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 7e-60 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400046966 |
Publications ? help Back to Top | |||
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