PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400046912
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family FAR1
Protein Properties Length: 252aa    MW: 28905.4 Da    PI: 6.3969
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400046912genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1941.8e-2987174291
                  FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                           fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++  k  r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+
  PGSC0003DMP400046912  87 FYNAYATRVGFIIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMILVRKISSGKWVVTKFVKEHSHPLC 173
                           ******************************************9988..9***************************************9 PP

                  FAR1  91 p 91 
                           p
  PGSC0003DMP400046912 174 P 174
                           7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-2687174IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDFVVDDHVS GDEEEGTVVE LRTVDENLIG GSSSEEALHQ VHDVKVDEDL PEREDLLLEE  60
AQSLDNSTSD EPFVGLEFES EAAAHAFYNA YATRVGFIIR VSKLSRSRRD GSAIGRALVC  120
NKEGFRMPDK REKIVRQRAE TRVGCRAMIL VRKISSGKWV VTKFVKEHSH PLCPGKGRRD  180
LIYDQYPNEH DKIRELSQQL AAEKKRSATY KRHLEMIFEH IEEHNQSLSK KIQDIVHNVR  240
ELESRDQHHH R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400046912
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164249.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBLM1CKJ50.0M1CKJ5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000694950.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA115682325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.23e-95FAR1 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]