PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400046757
Common NameLOC102585253
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 358aa    MW: 39088.4 Da    PI: 7.2247
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400046757genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.61.2e-09103127126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           +kt+lC+ f++ G C+y  +C+FaHg
  PGSC0003DMP400046757 103 FKTKLCCKFRA-GVCPYVTNCNFAHG 127
                           69*********.*************8 PP
2zf-CCCH18.73.2e-06182202626
                           -SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                           C+ f+    C+yGd+C+F H+
  PGSC0003DMP400046757 182 CKKFYTEEGCPYGDSCTFLHD 202
                           99999999************7 PP
3zf-CCCH44.33e-14236261126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           +kt++C+ +  tG+C++G++C+FaHg
  PGSC0003DMP400046757 236 WKTRICNKWETTGYCPFGSKCHFAHG 261
                           8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.5E-14100135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-8100133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.709102129IPR000571Zinc finger, CCCH-type
SMARTSM003560.012102128IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-7103127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.328176204IPR000571Zinc finger, CCCH-type
SMARTSM003560.85176203IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-7177204IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-8178204IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-17231266IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-10232266IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422235263IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-9235262IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-11236261IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MDFTGEAGFA GGNVIPDSTA GGGGYDSWGP NFSDQAVWAT EDDYKAWNTG PFCETPSNSS  60
QDGRHSQNRS GSEPPNKKSR NVQDSDARII VTSSSKAIGK MFFKTKLCCK FRAGVCPYVT  120
NCNFAHGIEE LRKPPPNWQE IVAAHENERG VMVELREEHQ IPILSSPDLR GESQRSAKGR  180
HCKKFYTEEG CPYGDSCTFL HDEQSRSRES VAISVTPTVG GFGNNATGAT QKPSNWKTRI  240
CNKWETTGYC PFGSKCHFAH GVAELNKFGG GPAETDGKDY VSVPPELKQG GVPSRATEST  300
VPSTIPALHT DVYHLGQGVQ VQRPTGIADR PGQRFFKKWK GPDKISKIYG DWIDDIE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400046757
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0140730.0BT014073.1 Lycopersicon esculentum clone 133173F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347340.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like
RefseqXP_015164273.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like
RefseqXP_015164274.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like
SwissprotQ84UQ31e-119C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLM1CK600.0M1CK60_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000692470.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37292343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-116C3H family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]