PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400046756 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C3H | ||||||||
Protein Properties | Length: 293aa MW: 32216 Da PI: 7.3859 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30 | 9.2e-10 | 103 | 127 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ G C+y +C+FaHg PGSC0003DMP400046756 103 FKTKLCCKFRA-GVCPYVTNCNFAHG 127 69*********.*************8 PP | |||||||
2 | zf-CCCH | 19 | 2.5e-06 | 182 | 202 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ f+ C+yGd+C+F H+ PGSC0003DMP400046756 182 CKKFYTEEGCPYGDSCTFLHD 202 99999999************7 PP | |||||||
3 | zf-CCCH | 44.6 | 2.3e-14 | 236 | 261 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg PGSC0003DMP400046756 236 WKTRICNKWETTGYCPFGSKCHFAHG 261 8************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-14 | 100 | 135 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-8 | 100 | 133 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.709 | 102 | 129 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.012 | 102 | 128 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.1E-7 | 103 | 127 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.328 | 176 | 204 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.85 | 176 | 203 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.89E-7 | 177 | 204 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-8 | 178 | 204 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-15 | 231 | 262 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.81E-10 | 232 | 263 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.422 | 235 | 263 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.6E-9 | 235 | 262 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-11 | 236 | 261 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MDFTGEAGFA GGNVIPDSTA GGGGYDSWGP NFSDQAVWAT EDDYKAWNTG PFCETPSNSS 60 QDGRHSQNRS GSEPPNKKSR NVQDSDARII VTSSSKAIGK MFFKTKLCCK FRAGVCPYVT 120 NCNFAHGIEE LRKPPPNWQE IVAAHENERG VMVELREEHQ IPILSSPDLR GESQRSAKGR 180 HCKKFYTEEG CPYGDSCTFL HDEQSRSRES VAISVTPTVG GFGNNATGAT QKPSNWKTRI 240 CNKWETTGYC PFGSKCHFAH GVAGMDITFC LFLLKGDRIS MYTLRLLKID DL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400046756 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006347340.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 56-like | ||||
Refseq | XP_015164273.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 56-like | ||||
Refseq | XP_015164274.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 56-like | ||||
Swissprot | Q84UQ3 | 2e-91 | C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | M1CK58 | 0.0 | M1CK58_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400069247 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 2e-89 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400046756 |
Publications ? help Back to Top | |||
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