PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400045974
Common NameLOC102588348
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 350aa    MW: 38383.8 Da    PI: 6.6359
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400045974genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.1e-0793117126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           +kt+lC+ f++ G C+y  +C+FaHg
  PGSC0003DMP400045974  93 FKTKLCCKFRA-GVCPYITNCNFAHG 117
                           69*********.*************8 PP
2zf-CCCH18.24.3e-06169194126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           yk + C+ f+    C+yGd+C+F H+
  PGSC0003DMP400045974 169 YKGRHCKKFYTEEGCPYGDTCTFLHD 194
                           78888********************7 PP
3zf-CCCH437.7e-14228253126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           +kt++C+ +  tG+C++G++C+FaHg
  PGSC0003DMP400045974 228 WKTRICNKWETTGYCPFGSKCHFAHG 253
                           8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.6E-1490125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-890123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.41892119IPR000571Zinc finger, CCCH-type
SMARTSM003560.01492118IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-593117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-9167196IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-7167195IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.742168196IPR000571Zinc finger, CCCH-type
SMARTSM003560.15168195IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-17224257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-10224258IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422227255IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-8227254IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-11228253IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDFMGEVSFA GGSDVSGFDN WGSGFPDQEV WATEDDYRAW NAGLSSETPS NSNQDGRHSL  60
DRSESEPPHK KLRNLQGVES VNNRAKAIGK MFFKTKLCCK FRAGVCPYIT NCNFAHGIEE  120
LRKPPPNWQD IVAAHESECA GGVMLEPREE HQIPTASSPE LCAESQRSYK GRHCKKFYTE  180
EGCPYGDTCT FLHDEQYRAR ESVAISVTPT IGGFGNNAAG ANLKPSNWKT RICNKWETTG  240
YCPFGSKCHF AHGAAELHKY GGGLVDMEGT DSLSTPPDLK QGGGPFKTAE STVPSTISAP  300
HTDVYHLGPG VQVQRPSGIV QRTGKRVIQK WKGPEKISKI YGDWIDDIE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400045974
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347596.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like
SwissprotQ84UQ31e-122C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLM1CID50.0M1CID5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000680590.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37292343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-121C3H family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]