PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400045708 | ||||||||
Common Name | LOC102598791 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 262aa MW: 30348.6 Da PI: 8.3081 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 145.3 | 3.3e-45 | 6 | 136 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 pGfrF Pt+eel+++yL+kk+egk+ el++vi+ v iy+++Pw+Lpk + +++++w+fF++r++++a+g r+ r+t+ gyWka PGSC0003DMP400045708 6 SPGFRFYPTEEELISFYLHKKLEGKRPELDRVIPVVTIYDFDPWHLPKfhgelC-MGDTEQWFFFVPRQEREARGGRPCRTTNCGYWKA 93 69***************************999***************6566532.34677***************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+ v+s++++++g+kk++vfykg+ap+g+kt+W m+eyr+ PGSC0003DMP400045708 94 TGSPSYVYSSNSKVIGVKKSMVFYKGKAPTGKKTKWKMNEYRA 136 *****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.67E-49 | 5 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 48.008 | 5 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-23 | 7 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MVEIISPGFR FYPTEEELIS FYLHKKLEGK RPELDRVIPV VTIYDFDPWH LPKFHGELCM 60 GDTEQWFFFV PRQEREARGG RPCRTTNCGY WKATGSPSYV YSSNSKVIGV KKSMVFYKGK 120 APTGKKTKWK MNEYRAIEEE VNSTISIPKL RHEMSLCRIY VISGSFRAFD RRPIATITRE 180 PSKSTINQGG ISMENVTKME AISSPDESLA MEEQDYVNLH HNDQIPIINQ EININSHNNK 240 RVKSNLHDET LISGWEQFNW M* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-34 | 5 | 160 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-34 | 5 | 160 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-34 | 5 | 160 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-34 | 5 | 160 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-34 | 5 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swm_B | 2e-34 | 5 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swm_C | 2e-34 | 5 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swm_D | 2e-34 | 5 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swp_A | 2e-34 | 5 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swp_B | 2e-34 | 5 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swp_C | 2e-34 | 5 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swp_D | 2e-34 | 5 | 160 | 20 | 166 | NAC domain-containing protein 19 |
4dul_A | 2e-34 | 5 | 160 | 17 | 163 | NAC domain-containing protein 19 |
4dul_B | 2e-34 | 5 | 160 | 17 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400045708 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 1e-161 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006362874.1 | 0.0 | PREDICTED: NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 2e-81 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | M1CHQ7 | 0.0 | M1CHQ7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400067707 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2494 | 23 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 9e-84 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400045708 |
Entrez Gene | 102598791 |
Publications ? help Back to Top | |||
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