PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400045419 | ||||||||
Common Name | LOC102595712 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB | ||||||||
Protein Properties | Length: 246aa MW: 28536.4 Da PI: 5.4048 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.1 | 7.4e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+d+++++G+ +W+ +++ g+ R++k+c++rw +yl PGSC0003DMP400045419 14 KGTWTPEEDRKLADYITKYGSWNWRQLPKYAGLERCGKSCRLRWMNYL 61 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 57.4 | 3.4e-18 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eEde+++++++qlG++ W++I+ +++ gR+++++k++w++ PGSC0003DMP400045419 67 RGNYTKEEDEIILNLHAQLGNK-WSAISVHLP-GRSDNEIKNHWHT 110 899*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.692 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.06E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.4E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.1E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.21E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.108 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-16 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.70E-10 | 69 | 110 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-25 | 69 | 115 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MVRTPCRDEN GRKKGTWTPE EDRKLADYIT KYGSWNWRQL PKYAGLERCG KSCRLRWMNY 60 LRPNVKRGNY TKEEDEIILN LHAQLGNKWS AISVHLPGRS DNEIKNHWHT ALKKRANYAS 120 NSSNDVSSNN NNRRKSNEEN QNASANNNNN MHENIALESS EWSPKESSSE ELSCIDYQQD 180 IFQEELAILE EITSGSFWTE PFEMDSKIDF VAPSIDYCGL VCPPSPFIPH EFLSSFDLDH 240 YDYNW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-28 | 14 | 117 | 7 | 109 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400045419 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 1e-134 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006360526.1 | 0.0 | PREDICTED: myb-related protein Myb4-like | ||||
Swissprot | Q9SJX8 | 3e-53 | MYB14_ARATH; Transcription factor MYB14 | ||||
TrEMBL | M1CH29 | 0.0 | M1CH29_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400067322 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02940.1 | 6e-54 | myb domain protein 107 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400045419 |
Entrez Gene | 102595712 |
Publications ? help Back to Top | |||
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