PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400045399
Common NameLOC102605014
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 352aa    MW: 39693 Da    PI: 8.1612
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400045399genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.35.8e-082072471055
                           HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           r RR+++ +++  L +llP++     kK++ a++Le+A +Y+k Lq
  PGSC0003DMP400045399 207 RLRRQKLSEKIRCLEKLLPWD-----KKMDTATMLEEAYKYVKFLQ 247
                           88******************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.824197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-5203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-11204258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.44E-6207251No hitNo description
PfamPF000102.6E-5207247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-9207254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MERKLPLLQP EFNAGEALLL PLMESDEAFI NGMYNGLSYQ SLLSLNLDHS YYGEVKPFSA  60
LSSNFRPSFT NDMLCAGATA SSQIQQSSAT FHELSSGDSA WLNKKTEINP DAAQKMKFPK  120
LEPVTDNLQL YPYNNEVVLS EPFNYFSNGF GYHSLPDLRC LEQPNYLDFS SSLVTTENRG  180
VEPVRPVSEV LSNLLKNRQP YSSSTTRLRR QKLSEKIRCL EKLLPWDKKM DTATMLEEAY  240
KYVKFLQAQI SVLQSMPPLV EGGASSDQDR NGKSTSYGSN HEAKAISVFG TLARLNRQQL  300
LQVLLNSPVA QTYLYSKGCC VYSVEQLVQY RKIAQRNAFY RRSLFFSGMF S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400045399
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360553.10.0PREDICTED: transcription factor bHLH69
TrEMBLM1CH100.0M1CH10_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000672870.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112501821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.17e-18bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]