PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400045201
Common NameLOC102586705
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 203aa    MW: 23038.8 Da    PI: 8.4163
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400045201genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.6e-19107157255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+++AeIrdp     k +r +lg++ t+e+Aa a+++a+ k++g
  PGSC0003DMP400045201 107 RYRGVRRRP-WGKFAAEIRDP---DrKGARLWLGTYETPEDAALAYDQAAYKIRG 157
                           7********.**********8...3245*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.355107165IPR001471AP2/ERF domain
CDDcd000183.51E-30107167No hitNo description
PfamPF008479.7E-14107157IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-23107166IPR016177DNA-binding domain
SMARTSM003801.6E-36107171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-32107166IPR001471AP2/ERF domain
PRINTSPR003672.4E-13108119IPR001471AP2/ERF domain
PRINTSPR003672.4E-13147167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MYQQKTTTIS DSDLSVLENI KFHLVNDSDF SQILSMFDPI NISYADIINS PNSSYGSSTS  60
AAEISWGDMI TNIDNPWQRV DKLEHEEEPK EEPIVARGVH APGDWNRYRG VRRRPWGKFA  120
AEIRDPDRKG ARLWLGTYET PEDAALAYDQ AAYKIRGSKA RLNFPHLIGS NKSEPIRVAP  180
RRRCHPSESS LVEYTSSKKR KL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-28108172670ATERF1
3gcc_A6e-28108172670ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180200RRRCHPSESSLVEYTSSKKRK
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400045201
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348008.11e-149PREDICTED: ethylene-responsive transcription factor 13-like
SwissprotQ8L9K11e-43ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLM1CGJ81e-148M1CGJ8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000670201e-149(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-45ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]