PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400044256
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 336aa    MW: 38362.1 Da    PI: 7.2258
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400044256genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.72.3e-0990114126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           ykt+ C  f++ GtC+ G+ C+FaHg
  PGSC0003DMP400044256  90 YKTRMCAKFLE-GTCRNGEHCTFAHG 114
                           9**********.*************9 PP
2zf-CCCH25.71.9e-08149171325
                           S---SGGGGTS--TTTTT-SS-S CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                           +++C+ f+ + +C+yGd+C+F H
  PGSC0003DMP400044256 149 MKICKKFYNGEECPYGDKCNFLH 171
                           579******66************ PP
3zf-CCCH38.32.2e-12224250127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           +kt++C+ +  tG+C++ drC+FaHg+
  PGSC0003DMP400044256 224 WKTKICSKWETTGQCPFRDRCHFAHGQ 250
                           8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.1E-1586122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-987120IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-489115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.43289116IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-690114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-7146173IPR000571Zinc finger, CCCH-type
SMARTSM003560.0027146173IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089146174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-8149172IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-6149171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-16219256IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-10220255IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.249223251IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5223250IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-8224250IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MTFSDQPQPP VPSHFMQMPF VGGDAGDVWP HSSMNHELFE SYSQFEHAPP FKRMREFDSN  60
SPNAAAFSAM NSRVNPPNLP GSKGTSHIFY KTRMCAKFLE GTCRNGEHCT FAHGVEDLRE  120
PPPNWQDLVR EKDRGAENWN DDQKIIHRMK ICKKFYNGEE CPYGDKCNFL HERPPKFKTD  180
MPRHRESSAI SIGTTGNRCD TELIEISKHG NADSDAVRIK PVYWKTKICS KWETTGQCPF  240
RDRCHFAHGQ SELQMPTGRV EMDMLTNSGP ITPRPFSIQP VDSSSANTLV NASMQEEREE  300
KKIHKWKLSK KISRIYGDWI DDLVPPHLHP DNADN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400044256
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340244.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
SwissprotQ9LT812e-83C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLM1CEA90.0M1CEA9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000655850.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65532434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.13e-79C3H family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]