PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400044152
Common NameLOC102599404
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 351aa    MW: 39389.4 Da    PI: 6.9024
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400044152genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07119138626
                           -SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                           C++f++ G+Ck Gd C +aHg
  PGSC0003DMP400044152 119 CPDFRK-GQCKKGDACEYAHG 138
                           ******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.4E-5113139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.056114140IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4119140IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5119138IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.155148172IPR000571Zinc finger, CCCH-type
SMARTSM0035616148171IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MMMIGRSTPT VQIPPWDVTD DPTVDVYSPF SVSPDSAFDA LTALQRYLPS NGNDVIFDSD  60
GLDIPVDAFS CDNFRMYEFK VRKCARGRSH DWTECPYAHP GEKARRRDPR KYHYSGTSCP  120
DFRKGQCKKG DACEYAHGVF ECWLHPARYR TQPCKDGTHC RRRVCFFAHT PEQLRVLPQN  180
SPRSFNESSD SFDGSPGRVG FESFSSSPPL ESPPMTPRGL AESMRNMQIG MVRGMRSMQM  240
GSPGFGSPRS PSILRPGFMS VPTTPTRSGV SVFDHCEEEP AMERVESGRD LRARIYAKLS  300
MENSLDDSGA PDVGWVSELL NGIRVRVIGN GFTDLRPLTF VNIEDYCYWL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400044152
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355306.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G21e-118C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLM1CE110.0M1CE11_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000654630.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-105C3H family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  3. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]