PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400044038
Common NameLOC102606071
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 500aa    MW: 55151.6 Da    PI: 6.652
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400044038genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.3e-17162211155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  PGSC0003DMP400044038 162 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 211
                           78*******************......55************************997 PP
2AP241.14.4e-13254304155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  PGSC0003DMP400044038 254 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 304
                           89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.8E-9162211IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-16162220IPR016177DNA-binding domain
CDDcd000181.14E-11163221No hitNo description
SMARTSM003801.3E-32163225IPR001471AP2/ERF domain
PROSITE profilePS5103217.794163219IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-17163220IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-17254313IPR016177DNA-binding domain
CDDcd000185.83E-26254314No hitNo description
PfamPF008471.3E-8254304IPR001471AP2/ERF domain
SMARTSM003802.5E-32255318IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-15255312IPR001471AP2/ERF domain
PROSITE profilePS5103215.527255312IPR001471AP2/ERF domain
PRINTSPR003675.5E-6256267IPR001471AP2/ERF domain
PRINTSPR003675.5E-6294314IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MMLDLNLSAI YDGKHSLADE SGSSNSSARN VEASSSAGDD ETCSTRAAAG SGDMFAFNFD  60
ILKVGGGGGG ENSRSCSNND DEEGYVITRS EFVTQQLFPV DNNAELNRTH TSRTTDWVDP  120
SVDPPNTVSF REVEQMGRLQ QQQQQQQQPV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI  180
WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GVDADINFNL SDYEEDMKQM KNLSKEEFVH  240
VLRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI  300
KCNGREAVTN FEPSTYEGET NSNPQSEGSQ QDLDLNLGIA TSSPKEIERS SSFQYHPYDM  360
QEATKSQMDK SGSPIVGSSH YKALPAVTSE QAHLWNGVFS NLIPNYEERV SGKRIDVGTS  420
HGHPNWAMQM HSQVGTTPMS MFSAAASSGF STPATTASAS QMSGPNNANT LNLSFASYST  480
PSMNTTPYYY QIRPQLPPP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400044038
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5869530.0HQ586953.1 Solanum lycopersicum AP2 transcription factor SlAP2d mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366409.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
SwissprotB8AXC31e-108AP21_ORYSI; APETALA2-like protein 1
TrEMBLM1CDR50.0M1CDR5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000653130.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-115related to AP2.7
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]