PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400044037
Common NameLOC102606071
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 485aa    MW: 53423.7 Da    PI: 6.955
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400044037genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56.1e-17162211155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  PGSC0003DMP400044037 162 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 211
                           78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.89E-16162220IPR016177DNA-binding domain
PfamPF008475.6E-9162211IPR001471AP2/ERF domain
CDDcd000181.10E-11163221No hitNo description
Gene3DG3DSA:3.30.730.103.5E-17163220IPR001471AP2/ERF domain
PROSITE profilePS5103217.794163219IPR001471AP2/ERF domain
SMARTSM003801.3E-32163225IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-6254298IPR016177DNA-binding domain
CDDcd000182.52E-13254299No hitNo description
SMARTSM003805.7E-13255303IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MMLDLNLSAI YDGKHSLADE SGSSNSSARN VEASSSAGDD ETCSTRAAAG SGDMFAFNFD  60
ILKVGGGGGG ENSRSCSNND DEEGYVITRS EFVTQQLFPV DNNAELNRTH TSRTTDWVDP  120
SVDPPNTVSF REVEQMGRLQ QQQQQQQQPV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI  180
WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GVDADINFNL SDYEEDMKQM KNLSKEEFVH  240
VLRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKAY DKAAIKCNGR EAVTNFEPST  300
YEGETNSNPQ SEGSQQDLDL NLGIATSSPK EIERSSSFQY HPYDMQEATK SQMDKSGSPI  360
VGSSHYKALP AVTSEQAHLW NGVFSNLIPN YEERVSGKRI DVGTSHGHPN WAMQMHSQVG  420
TTPMSMFSAA ASSGFSTPAT TASASQMSGP NNANTLNLSF ASYSTPSMNT TPYYYQIRPQ  480
LPPP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400044037
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5869530.0HQ586953.1 Solanum lycopersicum AP2 transcription factor SlAP2d mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366410.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotQ9SK031e-108RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLM1CDR40.0M1CDR4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000653130.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.21e-104related to AP2.7
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]