PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400043964
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 328aa    MW: 36831.5 Da    PI: 4.7057
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400043964genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.3e-1989142356
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           k++++t++q++ Le+ F +++++  e++ +LAk+lgL+ rq+ +WFqNrRa++k
  PGSC0003DMP400043964  89 KKRRLTDNQVQFLEKSFGEENKLEPERKVQLAKELGLQPRQIAIWFQNRRARWK 142
                           56689************************************************9 PP
2HD-ZIP_I/II129.51.3e-4188178191
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           ekkrrl+++qv++LE+sF ee+kLeperKv+la+eLglqprq+a+WFqnrRAR+ktkqlEkdy+ L+++ydalk++ ++L ke+e+Lr+
  PGSC0003DMP400043964  88 EKKRRLTDNQVQFLEKSFGEENKLEPERKVQLAKELGLQPRQIAIWFQNRRARWKTKQLEKDYDELRNRYDALKSNYNNLLKEKEDLRT 176
                           69**************************************************************************************9 PP

           HD-ZIP_I/II  90 el 91 
                           e+
  PGSC0003DMP400043964 177 EV 178
                           87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.17E-1978146IPR009057Homeodomain-like
PROSITE profilePS5007117.55684144IPR001356Homeobox domain
SMARTSM003896.8E-1987148IPR001356Homeobox domain
CDDcd000862.34E-1889145No hitNo description
PfamPF000461.8E-1689142IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.5E-2090151IPR009057Homeodomain-like
PRINTSPR000316.4E-6115124IPR000047Helix-turn-helix motif
PROSITE patternPS000270119142IPR017970Homeobox, conserved site
PRINTSPR000316.4E-6124140IPR000047Helix-turn-helix motif
PfamPF021832.7E-14144185IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAPGILYGGA SNFDGVFTQK QRDVFSSSTA PKGHLGSLFA PACSSNFLGS SSMVSFGGVN  60
GGKRSFFDSF DQDDNEADEL GEYFHQAEKK RRLTDNQVQF LEKSFGEENK LEPERKVQLA  120
KELGLQPRQI AIWFQNRRAR WKTKQLEKDY DELRNRYDAL KSNYNNLLKE KEDLRTEVFH  180
LTDKLFVKEK GNGQIDLRDE NKHSDALAKE TVADPISGVE MSNVPALVVK HQQEDLSSAK  240
SDVFDSESPR YTGRVHSSVI DQGDSARVFE TEQSDLSQDD DENFSKTMLS TANLLGKAAD  300
DDYPATSSNL SYFGFPVEDQ GFGFWTY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136144RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400043964
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006367068.10.0PREDICTED: homeobox-leucine zipper protein ATHB-16-like
TrEMBLM1CDJ80.0M1CDJ8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000652070.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.17e-43homeobox 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]