PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400043484 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 258aa MW: 29646.3 Da PI: 5.4723 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 74.7 | 2.3e-23 | 5 | 140 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk.....kvkaeek...ewyfFskrdkkyatgkrknr.atk 79 GfrF+Ptd e v +L + ++gk ++ + + ++vd y+ ePwd+ + + + +++ ++ fF+++ kk+ +++r +r + + PGSC0003DMP400043484 5 KEGFRFSPTDAEAV-SFLLRFIAGKLMNDSGFiTTHVDTYSEqEPWDIYShgvpcCNDDDDNdcsQYRFFITKLKKK-SESRYSRdVGN 91 68************.89999999999888787355668876449****73467753333444342334666666655.56788886889 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +g Wk++ k+k+v +k+g ++g kk++ + ++ + ++ dW+m+ey+l PGSC0003DMP400043484 92 KGSWKQQDKSKPVRKKGGPVIGYKKSMSYMNKGYYNKKNGDWLMKEYTL 140 ******************************98888889*********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 25.646 | 4 | 163 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.14E-22 | 4 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-14 | 6 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 258 aa Download sequence Send to blast |
MGNLKEGFRF SPTDAEAVSF LLRFIAGKLM NDSGFITTHV DTYSEQEPWD IYSHGVPCCN 60 DDDDNDCSQY RFFITKLKKK SESRYSRDVG NKGSWKQQDK SKPVRKKGGP VIGYKKSMSY 120 MNKGYYNKKN GDWLMKEYTL SEYLLDKFDK DCRDYVLCSI KKRTRTKEKL KLVNIVPQDL 180 EDQSSAATVE STSFTEGLQG WGVEYMPQLE LQNDMHEGTS NFVEPLSAPY TFEPTSMLDF 240 DYQYLPADFD CLRSITA* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400043484 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015088625.1 | 1e-164 | NAC domain-containing protein 78-like | ||||
TrEMBL | M1CCG9 | 0.0 | M1CCG9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400064501 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2219 | 12 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G04410.1 | 7e-12 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400043484 |
Publications ? help Back to Top | |||
---|---|---|---|
|